VAE or AAE?
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yqy6611 commented
Hi all,
I'd like to learn which cluster file generated by vamb is suitable for feeding to phamb, that via VAE or AAE. Many thanks!
joacjo commented
Hi Qiyi Yuan
We have only benchmarked using the clusters from the VAE model to phamb, so I would advise to you that one.
However, you can make your own small benchmark to learn if there is a benefit to use the AAE derived clusters on your data by evaluating the number of HQ vMAGs you achieve from using either one.