Errors when install on macOS Sonoma 14.4.1

Question

Errors when install on macOS Sonoma 14.4.1

YulongNiu opened this issue 8 months ago · 4 comments

I got the following errors when I was trying to install RcppParallel_5.1.7. The errors seem link to thetbb building process.

trying URL 'https://cloud.r-project.org/src/contrib/RcppParallel_5.1.7.tar.gz'
Content type 'application/x-gzip' length 1629119 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

* installing *source* package ‘RcppParallel’ ...
** package ‘RcppParallel’ successfully unpacked and MD5 sums checked
** using staged installation
** preparing to configure package 'RcppParallel' ...
*** configured file: 'R/tbb-autodetected.R.in' => 'R/tbb-autodetected.R'
*** configured file: 'src/install.libs.R.in' => 'src/install.libs.R'
*** configured file: 'src/Makevars.in' => 'src/Makevars'
** finished configure for package 'RcppParallel'
** libs
using C++ compiler: ‘Homebrew clang version 18.1.4’
using SDK: ‘’
(tbb) Building TBB using bundled sources ...
OS: macos
arch=intel64
compiler=clang
runtime=ccHomebrew clang version 18.1.4_os14.4.1
tbb_build_prefix=macos_intel64_clang_ccHomebrew clang version 18.1.4_os14.4.1
work_dir=/private/var/folders/8r/ykm9cc_j4l38tmyq85kv3qw80000gn/T/RtmpDX7Sbh/R.INSTALL6c774f90f75a/RcppParallel/src/build/macos_intel64_clang_ccHomebrew /private/var/folders/8r/ykm9cc_j4l38tmyq85kv3qw80000gn/T/RtmpDX7Sbh/R.INSTALL6c774f90f75a/RcppParallel/src/tbb/src/clang /private/var/folders/8r/ykm9cc_j4l38tmyq85kv3qw80000gn/T/RtmpDX7Sbh/R.INSTALL6c774f90f75a/RcppParallel/src/tbb/src/version /private/var/folders/8r/ykm9cc_j4l38tmyq85kv3qw80000gn/T/RtmpDX7Sbh/R.INSTALL6c774f90f75a/RcppParallel/src/tbb/src/18.1.4_os14.4.1_release
Created ../build/lib_release directory
make -j16 -C "../build/lib_release"  -r -f ../../build/Makefile.tbb cfg=release
../../build/Makefile.tbb:28: CONFIG: cfg=release arch=intel64 compiler=clang target=macos runtime=ccHomebrew clang version 18.1.4_os14.4.1
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o concurrent_hash_map.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_hash_map.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o concurrent_queue.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_queue.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o concurrent_vector.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_vector.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o dynamic_link.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/dynamic_link.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o itt_notify.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/itt_notify.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o cache_aligned_allocator.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/cache_aligned_allocator.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o pipeline.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/pipeline.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o queuing_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/queuing_mutex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o queuing_rw_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/queuing_rw_mutex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o reader_writer_lock.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/reader_writer_lock.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o spin_rw_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/spin_rw_mutex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o x86_rtm_rw_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/x86_rtm_rw_mutex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o spin_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/spin_mutex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o critical_section.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/critical_section.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/mutex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o recursive_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/recursive_mutex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o condition_variable.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/condition_variable.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o tbb_thread.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_thread.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o concurrent_monitor.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_monitor.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o semaphore.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/semaphore.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o private_server.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/private_server.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o rml_tbb.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/rml/client/rml_tbb.cpp
sh ../../build/version_info_macos.sh /usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1  -I../../src -I../../src/rml/include -I../../include -I. >version_string.ver
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o tbb_misc_ex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_misc_ex.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o task.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/task.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o task_group_context.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/task_group_context.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o governor.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/governor.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o market.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/market.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o arena.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/arena.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o scheduler.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/scheduler.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o observer_proxy.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/observer_proxy.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o tbb_statistics.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_statistics.cpp
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o tbb_main.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include ../../src/tbb/tbb_main.cpp
sh ../../build/generate_tbbvars.sh DY
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -E -x c++ ../../src/tbb/mac64-tbb-export.def -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1 -I../../src -I../../src/rml/include -I../../include > tbb.def
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -o tbb_misc.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64  -mmacosx-version-min=10.11  -fPIC  -D__TBB_BUILD=1 -Wall  -g -O3 -Wall -pedantic -mtune=native -pipe -DTBB_NO_LEGACY=1   -I../../src -I../../src/rml/include -I../../include -I. ../../src/tbb/tbb_misc.cpp
In file included from ../../src/tbb/private_server.cpp:21:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
In file included from ../../src/tbb/task.cpp:18:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
In file included from ../../src/tbb/governor.cpp:21:
In file included from ../../src/tbb/scheduler.h:20:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
In file included from ../../src/tbb/task_group_context.cpp:17:
In file included from ../../src/tbb/scheduler.h:20:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
In file included from ../../src/tbb/tbb_main.cpp:21:
In file included from ../../src/tbb/market.h:22:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
In file included from ../../src/tbb/observer_proxy.cpp:21:
In file included from ../../src/tbb/observer_proxy.h:22:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
In file included from ../../src/tbb/market.cpp:20:
In file included from ../../src/tbb/market.h:22:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
In file included from ../../src/tbb/arena.cpp:19:
In file included from ../../src/tbb/scheduler.h:20:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
../../src/tbb/arena.cpp:261:14: warning: variable 'drained' set but not used [-Wunused-but-set-variable]
  261 |     intptr_t drained = 0;
      |              ^
2 warnings generated.
In file included from ../../src/tbb/scheduler.cpp:17:
In file included from ../../src/tbb/custom_scheduler.h:20:
In file included from ../../src/tbb/scheduler.h:20:
../../src/tbb/scheduler_common.h:35:13: warning: keyword is hidden by macro definition [-Wkeyword-macro]
   35 |     #define private public
      |             ^
1 warning generated.
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I../inst/include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include -I/usr/local/opt/tcl-tk/include -fPIC -o libtbb.dylib concurrent_hash_map.o concurrent_queue.o concurrent_vector.o dynamic_link.o itt_notify.o cache_aligned_allocator.o pipeline.o queuing_mutex.o queuing_rw_mutex.o reader_writer_lock.o spin_rw_mutex.o x86_rtm_rw_mutex.o spin_mutex.o critical_section.o mutex.o recursive_mutex.o condition_variable.o tbb_thread.o concurrent_monitor.o semaphore.o private_server.o rml_tbb.o tbb_misc.o tbb_misc_ex.o task.o task_group_context.o governor.o market.o arena.o scheduler.o observer_proxy.o tbb_statistics.o tbb_main.o    -ldl -lpthread -dynamiclib -install_name @rpath/libtbb.dylib -stdlib=libc++ -m64 -mmacosx-version-min=10.11 -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/xz/lib -L/usr/local/lib -L/usr/local/opt/llvm/lib -Wl,-rpath,/usr/local/opt/llvm/lib -Wl,-exported_symbols_list,tbb.def
Undefined symbols for architecture x86_64:
  "std::exception_ptr::__from_native_exception_pointer(void*)", referenced from:
      tbb::internal::tbb_exception_ptr::tbb_exception_ptr(tbb::captured_exception const&) in task_group_context.o
  "___cxa_init_primary_exception", referenced from:
      tbb::internal::tbb_exception_ptr::tbb_exception_ptr(tbb::captured_exception const&) in task_group_context.o
ld: symbol(s) not found for architecture x86_64
clang++: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [libtbb.dylib] Error 1
make[1]: *** [tbb_release] Error 2
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I"/usr/local/Cellar/r/4.4.0/lib/R/include" -DNDEBUG -I../inst/include  -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/include -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include	-I/usr/local/opt/tcl-tk/include   -std=c++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fPIC  -g -O3 -Wall -pedantic -mtune=native -pipe  -c init.cpp -o init.o
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -I"/usr/local/Cellar/r/4.4.0/lib/R/include" -DNDEBUG -I../inst/include  -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/include -I/usr/local/opt/llvm/include -I/usr/local/opt/openssl/include -I/usr/local/opt/gettext/include	-I/usr/local/opt/tcl-tk/include   -std=c++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fPIC  -g -O3 -Wall -pedantic -mtune=native -pipe  -c options.cpp -o options.o
/usr/local/bin/ccache /usr/local/opt/llvm/bin/clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/usr/local/Cellar/r/4.4.0/lib/R/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/xz/lib -L/usr/local/lib -L/usr/local/opt/llvm/lib -Wl,-rpath,/usr/local/opt/llvm/lib -o RcppParallel.so init.o options.o -L/usr/local/Cellar/r/4.4.0/lib/R/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation
ld: warning: reexported library with install name '/usr/local/opt/llvm/lib/libunwind.1.dylib' found at '/usr/local/Cellar/llvm/18.1.4/lib/libunwind.1.0.dylib' couldn't be matched with any parent library and will be linked directly
installing via 'install.libs.R' to /usr/local/lib/R/4.4/site-library/00LOCK-RcppParallel/00new/RcppParallel
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘RcppParallel’:
 .onLoad failed in loadNamespace() for 'RcppParallel', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/usr/local/lib/R/4.4/site-library/00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so':
  dlopen(/usr/local/lib/R/4.4/site-library/00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so, 0x0006): symbol not found in flat namespace '__ZN3tbb10interface78internal15task_arena_base24internal_max_concurrencyEPKNS0_10task_arenaE'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/usr/local/lib/R/4.4/site-library/RcppParallel’

> sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-apple-darwin23.4.0
Running under: macOS Sonoma 14.4.1

Matrix products: default
BLAS:   /usr/local/Cellar/openblas/0.3.27/lib/libopenblasp-r0.3.27.dylib
LAPACK: /usr/local/Cellar/r/4.4.0/lib/R/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Asia/Shanghai
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_4.4.0 tools_4.4.0

Answer 1 · 2024-05-12T15:42:37.000Z

I walked around by using oneTBB installed by Homebrew.

I added the oneTBB path in ~/.zshrc

export TBB="/usr/local/Cellar/tbb/2021.12.0"
export TBB_INC="$TBB/include"
export TBB_LIB="$TBB/lib"

Install RcppParallel

Answer 2 · 2024-05-13T16:27:46.000Z

Works for me locally using the default macOS toolchain. Patches are welcome if you're able to figure out why things aren't working with your custom setup.

Answer 3 · 2024-06-20T20:24:57.000Z

@YulongNiu I spent like 2 or 3 hours trying to figure out what was going on. You solved my problems.

For reference, my path were a little different:

export TBB="/opt/homebrew/Cellar/tbb/2021.12.0"
export TBB_INC="$TBB/include"
export TBB_LIB="$TBB/lib"

This issue seems very recurring, I don't understand why they are being treated as completed. This is something that can be solved by adding a couple lines on the installation instructions.

Answer 4 · 2024-06-21T18:22:28.000Z

Because, as I said above:

Works for me locally using the default macOS toolchain. Patches are welcome if you're able to figure out why things aren't working with your custom setup.