Reed College Computational Biology
computational biology courses and projects at Reed College
Portland, OR
Pinned Repositories
BIO331-F20-Lab5-random-walk-sim
Bio331 Fall 2020 -- Lab 5
BIO331-F20-Lab6.2-community-detection
Bio331 -- Fall 2020 -- Lab 6 Part 2
Graphery
A graph tutorial website
GrapheryExecutor
Graphery Executor
GrapheryV2-Django
The backend of Graphery, a graph algorithm tutorial & visualization website
graphlet-clustering
growing-dags
networkx
Graphery networkx Wrapper
pathway-reconciliation
spras
Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)
Reed College Computational Biology's Repositories
Reed-CompBio/spras
Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)
Reed-CompBio/Graphery
A graph tutorial website
Reed-CompBio/pathway-reconciliation
Reed-CompBio/protein-weaver
A web interface for ontology-based protein network visualization.
Reed-CompBio/BIO331-Datasets
Bio331 Fall 2020 -- Datasets
Reed-CompBio/graphlet-clustering
Reed-CompBio/protein-function-prediction
A tool to predict protein functions (Gene Ontology) via protein-protein and ontology networks
Reed-CompBio/BIO331-F20-Lab5-random-walk-sim
Bio331 Fall 2020 -- Lab 5
Reed-CompBio/BIO331-F20-Lab6.2-community-detection
Bio331 -- Fall 2020 -- Lab 6 Part 2
Reed-CompBio/github-tutorial
Reed-CompBio/GrapheryExecutor
Graphery Executor
Reed-CompBio/GrapheryV2-Django
The backend of Graphery, a graph algorithm tutorial & visualization website
Reed-CompBio/growing-dags
Reed-CompBio/networkx
Graphery networkx Wrapper
Reed-CompBio/random-walk-with-restart
Reed-CompBio/BIO331-F20
Reed-CompBio/BIO331-F20-Lab2-animal-network-viz
Bio331 Fall 2020 -- Module 1 -- Lab 2
Reed-CompBio/BIO331-F20-Lab3-shortest-paths
Bio331 Fall 2020 -- Module 2 -- Lab 3
Reed-CompBio/BIO331-F20-Lab4-steiner-tree-approx
Biol330 Fall 2020 -- Lab 4
Reed-CompBio/BIO331-F20-Lab6.1-GitHub
Bio331 -- Fall 2020-- Lab 6 Part 1
Reed-CompBio/BIO331-F20-M2-interactome-properties
Bio331 Fall 2020 -- Module 2
Reed-CompBio/BIO331-F20-M3-betweenness-centralities
Bio331 Fall 2020 -- Module 3
Reed-CompBio/BowTieBuilder-Algorithm
This repository contains an implementation of the BowTieBuilder Algorithm.
Reed-CompBio/GrapheryRFCs
Reed-CompBio/GrapheryV2-Vue
The frontend of Graphery, a graph algorithm tutorial & visualization website
Reed-CompBio/nmii-contractility-regulators
Reed-CompBio/pathway-parsers
Signaling pathway database parsers
Reed-CompBio/ResponseNet
Implementation of the ResponseNet algorithm
Reed-CompBio/spras-benchmarking
Benchmarking datasets for the SPRAS project
Reed-CompBio/TieDIE
Tied Diffusion for Subnetwork Discovery (TieDIE)