Rfam/rfam-family-pipeline

Issues

• Install Perl libraries on Codon

  #72 opened 2 years ago by AntonPetrov
  0

• Install external software on Codon

  #71 opened 2 years ago by AntonPetrov
  0

• Fix `Tick-borne` spelling on codon

  #78 opened 2 years ago by nancyontiveros
  0

• Flavivirus PLRV

  #77 opened 2 years ago by nancyontiveros
  0

• HCV families

  #76 opened 2 years ago by nancyontiveros
  0

• Add plant telomerase family and include in clan http://europepmc.org/article/MED/31392988

  #75 opened 2 years ago by nancyontiveros
  0

• Unable to download accessions via tree controls

  #74 opened 2 years ago by emmaco
  0

• Get authorization token

  #73 opened 3 years ago by blakesweeney
  0

• Rewrite the PDB plugin

  #65 opened 3 years ago by AntonPetrov
  1

• Update ZWD families missing pseudoknots

  #69 opened 3 years ago by AntonPetrov
  2

• Do not validate taxids when using -onlydesc in rfci.pl

  #70 opened 3 years ago by AntonPetrov
  0

• Improve -onlydesc option in rfci

  #11 opened 3 years ago by kalvari
  2

• Find new HCV families and review packaging signals

  #18 opened 3 years ago by kalvari
  3

• Remove family description from R-scape images

  #2 opened 3 years ago by AntonPetrov
  1

• Re-threshold RF00857

  #30 opened 3 years ago by kalvari
  2

• Fix family entry RF04034 (_2 label issue)

  #53 opened 3 years ago by kalvari
  1

• Family inconsistency between rfam_live and SVN

  #58 opened 3 years ago by kalvari
  6

• QC step based on length of model

  #67 opened 3 years ago by nawrockie
  0

• Resolve group name issue in rfam/cloud:kubes image

  #66 opened 3 years ago by kalvari
  1

• Omit versions of rfamseq on Cloud

  #62 opened 3 years ago by kalvari
  0

• Remove hard-coded paths in updateTaxonomyWebsearch.pl

  #57 opened 3 years ago by kalvari
  0

• Multiple taxids for a single sequence

  #54 opened 4 years ago by nawrockie
  0

• Fix duplicated regions in SEEDSCORES files

  #52 opened 4 years ago by kalvari
  3

• Develop rfview.pl tool to manually launch family view processes

  #41 opened 4 years ago by kalvari
  0

• Overhaul rfreplace.pl script for new independent SEED paradigm

  #40 opened 5 years ago by nawrockie
  0

• Enable rfco/rfci on the cloud

  #39 opened 5 years ago by kalvari
  0

• Allow PDB sequences in alignments

  #38 opened 5 years ago by kalvari
  0

• RF02360 mismatching seed regions

  #34 opened 6 years ago by kalvari
  1

• Rfam view plugins crashing

  #33 opened 6 years ago by kalvari
  0

• Author duplicates

  #35 opened 6 years ago by kalvari
  0

• Resolve SS_cons2 tags in Rfam.seed alignments

  #29 opened 6 years ago by kalvari
  0

• Remove duplicates from rfamseq

  #12 opened 6 years ago by kalvari
  1

• Add `is_significant` to PdbFullRegion model

  #1 opened 6 years ago by AntonPetrov
  1

• rfseed.pl remove

  #7 opened 6 years ago by JoannaArgasinska
  1

• Add Telomerase_Asco to a clan

  #28 opened 6 years ago by kalvari
  1

• ykkC family improvements

  #19 opened 6 years ago by kalvari
  1

• Update names for RF00080

  #21 opened 6 years ago by kalvari
  1

• Update literature references of L10 families

  #22 opened 6 years ago by kalvari
  1

• Add author ORCiD in DESC files

  #24 opened 6 years ago by kalvari
  1

• Create a new S6 regulator family

  #20 opened 7 years ago by kalvari
  1

• Potential new families in paper 23396277

  #23 opened 7 years ago by kalvari
  1

• Update perl test data and resolve failures

  #17 opened 7 years ago by kalvari
  0

• Duplicated authors

  #14 opened 7 years ago by kalvari
  1

• Fix clan checkin (rclci) to populate clan_membership table

  #4 opened 7 years ago by kalvari
  0

• Fix family RF02791 - no entries in full_region table

  #6 opened 7 years ago by kalvari
  1

• Fix Pending families

  #5 opened 7 years ago by kalvari
  0

• Add timestamps to view process tables

  #3 opened 7 years ago by kalvari
  0