Rfam/rfam-production

Issues

• Use --top-only for cmscan on 3D structures

  #146 opened 7 months ago by blakesweeney
  2

• Release 14.10 checklist

  #167 opened 10 months ago by emmaco
  0

• Non utf-8 encoding in RF02541.stockholm.txt

  #166 opened 10 months ago by benjamin-lieser
  1

• Update R-scape in codon

  #169 opened 10 months ago by emmaco
  0

• automate copy of files to FTP .release

  #168 opened 10 months ago by emmaco
  0

• Checklist for 14.9

  #122 opened 10 months ago by emmaco
  1

• Remove [] from seed tree files

  #158 opened 2 years ago by blakesweeney
  0

• Fix authors in 3D seed files

  #157 opened 2 years ago by blakesweeney
  0

• Create a taxonomy export fie

  #156 opened 2 years ago by blakesweeney
  2

• Add script to query NCBI and update rfamseq and taxonomy tables

  #153 opened 2 years ago by emmaco
  0

• automate sync/copy over of databases

  #149 opened 2 years ago by emmaco
  1

• Release checklist 15.0

  #148 opened 2 years ago by emmaco
  0

• Do not remove `GR` lines from SEED alignments with 3D structure annotations

  #115 opened 2 years ago by AntonPetrov
  1

• Remove GO term GO:0045742 from RF03419

  #130 opened 2 years ago by blakesweeney
  1

• Notify if family gains a new 3D structure mapped

  #143 opened 2 years ago by blakesweeney
  1

• Download sequences using the NCBI Datasets CLI tool

  #118 opened 2 years ago by AntonPetrov
  1

• Rebuild all families as part of 15.0 scanning

  #139 opened 2 years ago by blakesweeney
  0

• Try to build full alignments

  #138 opened 2 years ago by blakesweeney
  0

• Detect if a PDBe 'should' match some Rfam family

  #137 opened 2 years ago by blakesweeney
  0

• Record the number of families in each release in a standard way

  #108 opened 3 years ago by AntonPetrov
  1

• Checklist for release 14.8

  #103 opened 2 years ago by emmaco
  0

• Update microRNA families for release 14.7

  #76 opened 2 years ago by AntonPetrov
  1

• Add update_rnacentral_descriptions to nextflow

  #116 opened 2 years ago by AntonPetrov
  1

• Update trackhubs

  #119 opened 2 years ago by AntonPetrov
  0

• Recompute R-scape images using the latest R-scape

  #112 opened 2 years ago by AntonPetrov
  0

• Checklist for release 14.7

  #70 opened 3 years ago by AntonPetrov
  1

• Update all R-scape images using the latest version

  #102 opened 3 years ago by AntonPetrov
  0

• Validate FTP files

  #101 opened 3 years ago by AntonPetrov
  0

• Modify post commit hook to require curator name in all commit messages

  #92 opened 3 years ago by blakesweeney
  1

• Asign ORCIDs for all Rfam people

  #91 opened 3 years ago by blakesweeney
  1

• Define achievemnts for tracking

  #89 opened 3 years ago by blakesweeney
  0

• Come up with simple way to select the wikiarticles that 'should' be updated

  #100 opened 3 years ago by blakesweeney
  0

• Do outreach to get people to update articles and win points

  #99 opened 3 years ago by blakesweeney
  0

• Create a leaderboard for Rfam wikipedia improvments

  #98 opened 3 years ago by blakesweeney
  0

• Create leaderboard for all Rfam changes

  #97 opened 3 years ago by blakesweeney
  0

• Create a wikihub to show all articles in Rfam

  #96 opened 3 years ago by blakesweeney
  0

• Deteremine which wikipedia edits came from Rfam people

  #95 opened 3 years ago by blakesweeney
  0

• Parse wikipedia edit history and extract all users

  #94 opened 3 years ago by blakesweeney
  0

• Develop new part of release workflow to push all Rfam curation and wikipedia events to APICURON on each release

  #93 opened 3 years ago by blakesweeney
  0

• Parse SVN logs to extract info for all previous Rfam people

  #90 opened 3 years ago by blakesweeney
  0

• Download genomes based on UniProt reference proteomes

  #87 opened 3 years ago by AntonPetrov
  0

• Create a concatenated file and split it into parts

  #88 opened 3 years ago by AntonPetrov
  0

• Integrate with APICURON

  #78 opened 3 years ago by AntonPetrov
  0

• Add a new tool for replacing accessions in SEED using NCBI BLAST

  #71 opened 3 years ago by AntonPetrov
  2

• Checklist for release 14.6

  #69 opened 3 years ago by AntonPetrov
  0

• Create a .gitignore file

  #64 opened 3 years ago by kalvari
  1

• Fix problematic sequence XML dumps

  #67 opened 3 years ago by kalvari
  0

• Expand generate_ftp_files.py to auto-generate all files on ftp

  #66 opened 3 years ago by kalvari
  0

• Regenerate fasta files on FTP

  #65 opened 4 years ago by kalvari
  0

• Display progress when running auto_commit

  #62 opened 4 years ago by kalvari
  0