Sequence search issue
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AntonPetrov commented
I used web-search to search for accession AP011496.1 (RF02547 : mtPerm-5S) and the sequence matched all the families in the LSU clan apart from the 5S RNA family I took the sequence from.
The families are listed below:
RF02543 - LSU_rRNA_eukarya
RF02541 - LSU_rRNA_bacteria
RF02540 - LSU_rRNA_archaea
AntonPetrov commented
This appears to be resolved.