Roy-lab/scMTNI

Issues

• The ’cluster.bam‘ file generated by the ’PrepareBamForLigerclusters.py‘ script does not contain any sequence information.

  #18 opened 5 months ago by xudongzhango
  6

• In the fifth step of generating the prior network, how are the {sample}_allregulators.txt and ${sample}_allGenes.txt files obtained?

  #19 opened 5 months ago by xudongzhango
  4

• Questions on batch correction with exp matrix (generation of .table file)

  #17 opened 6 months ago by mapo121
  1

• rliger not converting list -> matrix

  #16 opened 6 months ago by mapo121
  3

• Cannot link GSL correctly

  #15 opened 6 months ago by mapo121
  14

• Calculating Branch-specific gain rate and Branch-specific loss rate

  #14 opened 6 months ago by mapo121
  2

• Some questions about the input data for scMTNI

  #12 opened 7 months ago by jingkun12137
  1

• scMTNI output interpretation

  #11 opened 7 months ago by PrinceZarzees
  1

• Issues with genPriorNetwork

  #10 opened 7 months ago by wuwei77lx
  1

• celltype_tree_ancestor.txt

  #9 opened 7 months ago by mabaoweireadingene
  1

• Running method with single cluster

  #8 opened 7 months ago by PeterZZQ
  4

• Running scMTNI with subsampling

  #13 opened 7 months ago by PeterZZQ
  1

• prior network bed format

  #7 opened a year ago by shalberg
  1

• Issues Compiling Packages for scMTNI

  #4 opened 2 years ago by Anweshagorantla
  1

• scATACseq_FBS.txt file missing

  #3 opened 2 years ago by pagarwal14
  1

• Running scMTNI with prior matrix generated

  #6 opened 2 years ago by PeterZZQ
  7

• make

  #2 opened 2 years ago by pagarwal14
  1