pyFlapjack is our Python package that allows you to interface the Flapjack with Pandas and Numpy stack, so that you can easily implement it in your projects.
Installing pyFlapjack is quite simple. Please refer to our Wiki for installation instructions, available here: Installation.
Please visit our documentation with API reference at Read the Docs pyflapjack.rtfd.io
Now that you have pyFlapjack installed you can familiarize yourself with the tool using the Jupyter notebook tutorials designed for this purpose.
The repository for Flapjack API is available here: Flapjack API; and the one for the Flapjack Frontend is available here: Flapjack Frontend.
Please reference our Flapjack's paper–available here, using the following reference:
Guillermo Yáñez Feliú, Benjamín Earle Gómez, Verner Codoceo Berrocal, Macarena Muñoz Silva, Isaac N. Nuñez, Tamara F. Matute, Anibal Arce Medina, Gonzalo Vidal, Carlos Vidal Céspedes, Jonathan Dahlin, Fernán Federici, and Timothy J. Rudge ACS Synthetic Biology 2021 10 (1), 183-191 DOI: 10.1021/acssynbio.0c00554