SACGF/cdot

Issues

• PyHGVS - no transcript exception isn't great

  #34 opened 2 years ago
  1

• Pyhgvs data conversion - non-coding transcripts have bad cds start/end conversion

  #33 opened 2 years ago
  0

• Signature of pyvs_transcript.py get_pyhgvs_data inconsistant

  #32 opened 2 years ago
  1

• Upload release gzip files to github

  #31 opened 2 years ago
  0

• Store transcript tags

  #30 opened 2 years ago
  1

• All json.gz files should have cdot version in the name

  #29 opened 2 years ago
  0

• Move up/down transcript versions from VariantGrid to cdot

  #28 opened 2 years ago
  0

• cdot responsible for fixing bad HGVS, allow warnings etc

  #27 opened 2 years ago
  5

• Missing RefSeq GRCh37 GFF

  #26 opened 2 years ago
  1

• GeneInfo currently fails for some records

  #25 opened 2 years ago
  0

• Runbook to update/create cdot `json.gz` files

  #24 opened 2 years ago
  3

• UTA transcript conversion needs to provide cds_start/cds_end for pyhgvs

  #23 opened 2 years ago
  1

• transcripts for region doesn't handle SNPs properly - HGVS relevant_transcripts fails

  #22 opened 2 years ago
  0

• Implement HGVS data provider method get_similar_transcripts

  #21 opened 2 years ago
  1

• Implement HGVS data provider method get_gene_info

  #20 opened 2 years ago
  3

• Implement HGVS data provider method get_acs_for_protein_seq

  #19 opened 2 years ago
  1

• Transcripts over a position

  #18 opened 2 years ago
  1

• Add build patch version

  #16 opened 2 years ago
  1

• Bad conversion of UTA cDNA matches

  #15 opened 3 years ago
  2

• Add protein IDs to genes

  #14 opened 2 years ago
  5

• Make UTA optional in refseq generation scripts

  #13 opened 3 years ago
  1

• Don't use intermediate pyreference format - go straight to cdot merge_historical

  #12 opened 3 years ago
  0

• Added NCBI release 110

  #11 opened 3 years ago
  0

• ENSEMBL g_to_c

  #9 opened 3 years ago
  5

• Move pyreference gff_to_json code into cdot

  #8 opened 3 years ago
  0

• Use ijson to reduce RAM usage

  #7 opened 3 years ago
  0

• Handle alignment gap (CIGAR) mismatches

  #6 opened 3 years ago
  1

• Do some benchmarks

  #5 opened 3 years ago
  3

• Write a REST client

  #4 opened 3 years ago
  0

• Create REST service

  #3 opened 3 years ago
  1

• Script to combine genome builds

  #2 opened 3 years ago
  0

• Get UTA transcripts

  #1 opened 3 years ago
  0