[SANSA-Query example] : ERROR DispatcherServlet: Context initialization failed

Question

[SANSA-Query example] : ERROR DispatcherServlet: Context initialization failed

GezimSejdiu opened this issue 7 years ago · 10 comments

Hi,

this issue is happening when we try to run Sparqlify example.

ERROR SpringComponentProvider: None or multiple beans found in Spring context for type class org.aksw.jena_sparql_api.web.servlets.ServletSparqlServiceImpl, skipping the type.

For more details see the full stack :

Stack trace

18/04/20 13:11:07 ERROR SpringComponentProvider: None or multiple beans found in Spring context for type class org.aksw.jena_sparql_api.web.servlets.ServletSparqlServiceImpl, skipping the type.
18/04/20 13:11:07 INFO ROOT: Initializing Spring FrameworkServlet 'dispatcherServlet'
18/04/20 13:11:07 INFO DispatcherServlet: FrameworkServlet 'dispatcherServlet': initialization started
18/04/20 13:11:07 INFO AnnotationConfigWebApplicationContext: Refreshing WebApplicationContext for namespace 'dispatcherServlet-servlet': startup date [Fri Apr 20 13:11:07 CEST 2018]; parent: org.springframework.web.context.support.GenericWebApplicationContext@320fc4b0
18/04/20 13:11:07 INFO AnnotationConfigWebApplicationContext: Registering annotated classes: [class org.aksw.jena_sparql_api.web.server.WebMvcConfigSnorql]
18/04/20 13:11:07 INFO AutowiredAnnotationBeanPostProcessor: JSR-330 'javax.inject.Inject' annotation found and supported for autowiring
18/04/20 13:11:07 WARN AnnotationConfigWebApplicationContext: Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.context.event.internalEventListenerProcessor': Post-processing of merged bean definition failed; nested exception is java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
18/04/20 13:11:07 ERROR DispatcherServlet: Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.context.event.internalEventListenerProcessor': Post-processing of merged bean definition failed; nested exception is java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:526)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
	at org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
	at org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:540)
	at org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
	at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
	at javax.servlet.GenericServlet.init(GenericServlet.java:244)
	at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:665)
	at org.eclipse.jetty.servlet.ServletHolder.initialize(ServletHolder.java:423)
	at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:760)
	at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:348)
	at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1515)
	at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1477)
	at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
	at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
	at org.eclipse.jetty.server.Server.start(Server.java:418)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:107)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
	at org.eclipse.jetty.server.Server.doStart(Server.java:385)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:56)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:48)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:40)
	at org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer.create(FactoryBeanSparqlServer.java:84)
	at net.sansa_stack.examples.spark.query.Sparqlify$.run(Sparqlify.scala:54)
	at net.sansa_stack.examples.spark.query.Sparqlify$.main(Sparqlify.scala:22)
	at net.sansa_stack.examples.spark.query.Sparqlify.main(Sparqlify.scala)
Caused by: java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.findPersistenceMetadata(PersistenceAnnotationBeanPostProcessor.java:350)
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(PersistenceAnnotationBeanPostProcessor.java:296)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyMergedBeanDefinitionPostProcessors(AbstractAutowireCapableBeanFactory.java:992)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:523)
	... 36 more
18/04/20 13:11:07 WARN ROOT: unavailable
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.context.event.internalEventListenerProcessor': Post-processing of merged bean definition failed; nested exception is java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:526)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
	at org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
	at org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:540)
	at org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
	at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
	at javax.servlet.GenericServlet.init(GenericServlet.java:244)
	at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:665)
	at org.eclipse.jetty.servlet.ServletHolder.initialize(ServletHolder.java:423)
	at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:760)
	at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:348)
	at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1515)
	at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1477)
	at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
	at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
	at org.eclipse.jetty.server.Server.start(Server.java:418)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:107)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
	at org.eclipse.jetty.server.Server.doStart(Server.java:385)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:56)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:48)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:40)
	at org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer.create(FactoryBeanSparqlServer.java:84)
	at net.sansa_stack.examples.spark.query.Sparqlify$.run(Sparqlify.scala:54)
	at net.sansa_stack.examples.spark.query.Sparqlify$.main(Sparqlify.scala:22)
	at net.sansa_stack.examples.spark.query.Sparqlify.main(Sparqlify.scala)
Caused by: java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.findPersistenceMetadata(PersistenceAnnotationBeanPostProcessor.java:350)
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(PersistenceAnnotationBeanPostProcessor.java:296)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyMergedBeanDefinitionPostProcessors(AbstractAutowireCapableBeanFactory.java:992)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:523)
	... 36 more
18/04/20 13:11:07 WARN WebAppContext: Failed startup of context o.e.j.w.WebAppContext@28200d43{/,file:///tmp/jetty-0.0.0.0-7531-jena-sparql-api-server-utils-3.5.0-2.jar-_-any-8595261063220975453.dir/webapp/,UNAVAILABLE}{file:/home/gezim/.m2/repository/org/aksw/jena-sparql-api/jena-sparql-api-server-utils/3.5.0-2/jena-sparql-api-server-utils-3.5.0-2.jar}
javax.servlet.ServletException: dispatcherServlet@7ef5559e==org.springframework.web.servlet.DispatcherServlet,jsp=null,order=1,inst=false
	at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:686)
	at org.eclipse.jetty.servlet.ServletHolder.initialize(ServletHolder.java:423)
	at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:760)
	at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:348)
	at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1515)
	at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1477)
	at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
	at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
	at org.eclipse.jetty.server.Server.start(Server.java:418)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:107)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
	at org.eclipse.jetty.server.Server.doStart(Server.java:385)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:56)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:48)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:40)
	at org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer.create(FactoryBeanSparqlServer.java:84)
	at net.sansa_stack.examples.spark.query.Sparqlify$.run(Sparqlify.scala:54)
	at net.sansa_stack.examples.spark.query.Sparqlify$.main(Sparqlify.scala:22)
	at net.sansa_stack.examples.spark.query.Sparqlify.main(Sparqlify.scala)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.context.event.internalEventListenerProcessor': Post-processing of merged bean definition failed; nested exception is java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:526)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
	at org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
	at org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:540)
	at org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
	at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
	at javax.servlet.GenericServlet.init(GenericServlet.java:244)
	at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:665)
	... 22 more
Caused by: java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.findPersistenceMetadata(PersistenceAnnotationBeanPostProcessor.java:350)
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(PersistenceAnnotationBeanPostProcessor.java:296)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyMergedBeanDefinitionPostProcessors(AbstractAutowireCapableBeanFactory.java:992)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:523)
	... 36 more
18/04/20 13:11:07 INFO AbstractConnector: Started ServerConnector@3a36da5e{HTTP/1.1,[http/1.1]}{0.0.0.0:7531}
18/04/20 13:11:07 INFO Server: Started @9377ms

It seems that it could be related to Sparqlify’s servlet engine, but @Aklakan could you have a look for more details how to debug this issue.

Best regards,
Gezim

Answer 1 · 2018-06-22T10:15:36.000Z

Sigh, I am constantly trying to separate spring-related code from any actual implementations due to all the version conflicts caused. The cause of the exception seems to indicate yet another one of those issues:

java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V

Answer 2 · 2018-06-25T20:36:01.000Z

The issue should be fixed (added a unit test to jena-sparql-api-server-standalone)

Answer 3 · 2018-07-13T13:55:47.000Z

HI @Aklakan ,
just to reactivate this thread. The error still persist on SANSA-Examples when we run Sparqlify example.

Properties

jena.version: 3.7.0
sparqlify-core.version: 0.8.5

The error is shown below :

18/07/13 15:51:31 ERROR DispatcherServlet: Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.context.event.internalEventListenerProcessor': Post-processing of merged bean definition failed; nested exception is java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:526)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
	at org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
	at org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:540)
	at org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
	at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
	at javax.servlet.GenericServlet.init(GenericServlet.java:244)
	at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:665)
	at org.eclipse.jetty.servlet.ServletHolder.initialize(ServletHolder.java:423)
	at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:760)
	at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:348)
	at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1515)
	at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1477)
	at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
	at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
	at org.eclipse.jetty.server.Server.start(Server.java:418)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:107)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
	at org.eclipse.jetty.server.Server.doStart(Server.java:385)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:54)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:46)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:38)
	at org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer.create(FactoryBeanSparqlServer.java:85)
	at net.sansa_stack.examples.spark.query.Sparqlify$.run(Sparqlify.scala:54)
	at net.sansa_stack.examples.spark.query.Sparqlify$.main(Sparqlify.scala:22)
	at net.sansa_stack.examples.spark.query.Sparqlify.main(Sparqlify.scala)
Caused by: java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.findPersistenceMetadata(PersistenceAnnotationBeanPostProcessor.java:350)
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(PersistenceAnnotationBeanPostProcessor.java:296)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyMergedBeanDefinitionPostProcessors(AbstractAutowireCapableBeanFactory.java:992)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:523)
	... 36 more

Could you guide me how to resolve it as you mention on your previous comment that the issue should be fixed now.
Best regards,

Answer 4 · 2018-07-16T07:31:18.000Z

There are still Spring version conflicts:

mvn dependency:tree

Sparqlify works on version 4.3.14.RELEASE

+- net.sansa-stack:sansa-query-spark_2.11:jar:0.4.1-SNAPSHOT:compile
[INFO] |  +- org.aksw.jena-sparql-api:jena-sparql-api-server-standalone:jar:3.7.0-3:compile
[INFO] |  |  \- org.aksw.jena-sparql-api:jena-sparql-api-server-utils:jar:3.7.0-3:compile
[INFO] |  |     +- org.aksw.jena-sparql-api:jena-sparql-api-web:jar:3.7.0-3:compile
[INFO] |  |     |  +- org.aksw.jena-sparql-api:jena-sparql-api-concepts:jar:3.7.0-3:compile
[INFO] |  |     |  |  \- org.aksw.gson:gson-utils-core:jar:1.0.0:compile
[INFO] |  |     |  +- org.aksw.jena-sparql-api:jena-sparql-api-update:jar:3.7.0-3:compile
[INFO] |  |     |  \- org.glassfish.jersey.ext:jersey-spring3:jar:2.26-b03:compile
[INFO] |  |     |     +- org.glassfish.hk2:hk2:jar:2.5.0-b36:compile
[INFO] |  |     |     |  +- org.glassfish.hk2:config-types:jar:2.5.0-b36:compile
[INFO] |  |     |     |  +- org.glassfish.hk2:hk2-core:jar:2.5.0-b36:compile
[INFO] |  |     |     |  +- org.glassfish.hk2:hk2-config:jar:2.5.0-b36:compile
[INFO] |  |     |     |  |  \- org.hibernate:hibernate-validator:jar:5.2.4.Final:compile
[INFO] |  |     |     |  |     +- org.jboss.logging:jboss-logging:jar:3.2.1.Final:compile
[INFO] |  |     |     |  |     \- com.fasterxml:classmate:jar:1.1.0:compile
[INFO] |  |     |     |  +- org.glassfish.hk2:hk2-runlevel:jar:2.5.0-b36:compile
[INFO] |  |     |     |  \- org.glassfish.hk2:class-model:jar:2.5.0-b36:compile
[INFO] |  |     |     |     \- org.glassfish.hk2.external:asm-all-repackaged:jar:2.5.0-b36:compile
[INFO] |  |     |     \- org.glassfish.hk2:spring-bridge:jar:2.5.0-b36:compile
[INFO] |  |     +- org.glassfish.jersey.media:jersey-media-multipart:jar:2.26-b03:compile
[INFO] |  |     |  \- org.jvnet.mimepull:mimepull:jar:1.9.6:compile
[INFO] |  |     +- org.springframework:spring-webmvc:jar:4.3.14.RELEASE:compile
[INFO] |  |     +- org.springframework:spring-web:jar:4.3.14.RELEASE:compile

but

[INFO] +- net.sansa-stack:sansa-ml-spark_2.11:jar:0.4.1-SNAPSHOT:compile
...
[INFO] |  \- org.springframework:spring:jar:2.5.6.SEC03:compile

The question is, who added the Spring dependency for the ML layer and why?

Answer 5 · 2018-07-16T07:33:25.000Z

Ok, it was Hamed:
SANSA-Stack/Archived-SANSA-ML@1e6bedd

and he's using it just for a StopWatch class org.springframework.util.StopWatch in a script for testing ... I guess this should be removed and replaced by maybe Guava StopWatch or plain Java/Scala...

Answer 6 · 2018-07-16T14:32:45.000Z

Hi @LorenzBuehmann ,
many thanks for deprecating the dependency from SANSA-ML. I just tested it on SANSA-Example locally by doing mvn -U install and then run from the IDE. I still get the error:

18/07/16 16:29:34 ERROR DispatcherServlet: Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.context.event.internalEventListenerProcessor': Post-processing of merged bean definition failed; nested exception is java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:526)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
	at org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
	at org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:540)
	at org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
	at org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
	at javax.servlet.GenericServlet.init(GenericServlet.java:244)
	at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:665)
	at org.eclipse.jetty.servlet.ServletHolder.initialize(ServletHolder.java:423)
	at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:760)
	at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:348)
	at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1515)
	at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1477)
	at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
	at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
	at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
	at org.eclipse.jetty.server.Server.start(Server.java:418)
	at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:107)
	at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
	at org.eclipse.jetty.server.Server.doStart(Server.java:385)
	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:54)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:46)
	at org.aksw.jena_sparql_api.web.server.ServerUtils.startServer(ServerUtils.java:38)
	at org.aksw.jena_sparql_api.server.utils.FactoryBeanSparqlServer.create(FactoryBeanSparqlServer.java:85)
	at net.sansa_stack.examples.spark.query.Sparqlify$.run(Sparqlify.scala:54)
	at net.sansa_stack.examples.spark.query.Sparqlify$.main(Sparqlify.scala:22)
	at net.sansa_stack.examples.spark.query.Sparqlify.main(Sparqlify.scala)
Caused by: java.lang.NoSuchMethodError: org.springframework.beans.factory.annotation.InjectionMetadata.<init>(Ljava/lang/Class;)V
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.findPersistenceMetadata(PersistenceAnnotationBeanPostProcessor.java:350)
	at org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor.postProcessMergedBeanDefinition(PersistenceAnnotationBeanPostProcessor.java:296)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyMergedBeanDefinitionPostProcessors(AbstractAutowireCapableBeanFactory.java:992)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:523)
	... 36 more

The springframework is no longer part of SANSA-ML (see the dependency tree below) and still the issue persist.

[INFO] +- net.sansa-stack:sansa-ml-spark_2.11:jar:0.4.1-SNAPSHOT:compile
[INFO] |  +- net.sansa-stack:sansa-ml-common_2.11:jar:0.4.1-SNAPSHOT:compile
[INFO] |  +- com.github.fommil.netlib:all:pom:1.1.2:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_ref-osx-x86_64:jar:natives:1.1:compile
[INFO] |  |  |  \- com.github.fommil.netlib:native_ref-java:jar:1.1:compile
[INFO] |  |  |     \- com.github.fommil:jniloader:jar:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_ref-linux-x86_64:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_ref-linux-i686:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_ref-win-x86_64:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_ref-win-i686:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_ref-linux-armhf:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_system-osx-x86_64:jar:natives:1.1:compile
[INFO] |  |  |  \- com.github.fommil.netlib:native_system-java:jar:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_system-linux-x86_64:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_system-linux-i686:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_system-linux-armhf:jar:natives:1.1:compile
[INFO] |  |  +- com.github.fommil.netlib:netlib-native_system-win-x86_64:jar:natives:1.1:compile
[INFO] |  |  \- com.github.fommil.netlib:netlib-native_system-win-i686:jar:natives:1.1:compile
[INFO] |  +- net.jpountz.lz4:lz4:jar:1.3.0:compile
[INFO] |  +- net.sourceforge.owlapi:org.semanticweb.hermit:jar:1.3.8.510:compile
[INFO] |  |  +- net.sourceforge.owlapi:owlapi-distribution:jar:5.1.0:compile
[INFO] |  |  |  +- net.sourceforge.owlapi:owlapi-compatibility:jar:5.1.0:compile
[INFO] |  |  |  \- org.eclipse.rdf4j:rdf4j-util:jar:2.1.4:compile
[INFO] |  |  +- org.apache.ws.commons.axiom:axiom-api:jar:1.2.14:compile
[INFO] |  |  |  +- org.apache.geronimo.specs:geronimo-activation_1.1_spec:jar:1.1:compile
[INFO] |  |  |  +- org.apache.geronimo.specs:geronimo-javamail_1.4_spec:jar:1.7.1:compile
[INFO] |  |  |  +- jaxen:jaxen:jar:1.1.4:compile
[INFO] |  |  |  +- org.apache.geronimo.specs:geronimo-stax-api_1.0_spec:jar:1.0.1:compile
[INFO] |  |  |  \- org.apache.james:apache-mime4j-core:jar:0.7.2:compile
[INFO] |  |  +- org.apache.ws.commons.axiom:axiom-c14n:jar:1.2.14:compile
[INFO] |  |  +- org.apache.ws.commons.axiom:axiom-impl:jar:1.2.14:compile
[INFO] |  |  |  \- org.codehaus.woodstox:woodstox-core-asl:jar:4.1.4:compile
[INFO] |  |  |     \- org.codehaus.woodstox:stax2-api:jar:3.1.1:compile
[INFO] |  |  +- org.apache.ws.commons.axiom:axiom-dom:jar:1.2.14:compile
[INFO] |  |  \- dk.brics.automaton:automaton:jar:1.11-8:compile
[INFO] |  +- org.apache.hadoop:hadoop-streaming:jar:2.8.3:compile
[INFO] |  +- net.sf.extjwnl:extjwnl:jar:1.9.4:compile
[INFO] |  |  \- com.googlecode.concurrentlinkedhashmap:concurrentlinkedhashmap-lru:jar:1.3.2:compile
[INFO] |  +- net.sf.extjwnl:extjwnl-data-wn31-map:jar:1.0:compile
[INFO] |  +- com.intel.analytics.bigdl:bigdl-SPARK_2.2:jar:0.3.0:compile
[INFO] |  |  +- org.apache.opennlp:opennlp-tools:jar:1.6.0:compile
[INFO] |  |  +- com.twelvemonkeys.imageio:imageio-jpeg:jar:3.2.1:compile
[INFO] |  |  |  +- com.twelvemonkeys.imageio:imageio-core:jar:3.2.1:compile
[INFO] |  |  |  +- com.twelvemonkeys.imageio:imageio-metadata:jar:3.2.1:compile
[INFO] |  |  |  +- com.twelvemonkeys.common:common-lang:jar:3.2.1:compile
[INFO] |  |  |  +- com.twelvemonkeys.common:common-io:jar:3.2.1:compile
[INFO] |  |  |  \- com.twelvemonkeys.common:common-image:jar:3.2.1:compile
[INFO] |  |  +- com.intel.analytics.bigdl:bigdl-core:pom:0.3.0:compile
[INFO] |  |  |  +- com.intel.analytics.bigdl.native:mkl-java:jar:0.3.0:compile
[INFO] |  |  |  +- com.intel.analytics.bigdl.bigquant:bigquant-java:jar:0.3.0:compile
[INFO] |  |  |  +- com.intel.analytics.bigdl.native:mkl-java-mac:jar:0.3.0:compile
[INFO] |  |  |  +- com.intel.analytics.bigdl.bigquant:bigquant-java-mac:jar:0.3.0:compile
[INFO] |  |  |  +- com.intel.analytics.bigdl.native:mkl-java-win64:jar:0.3.0:compile
[INFO] |  |  |  \- com.intel.analytics.bigdl.bigquant:bigquant-java-win64:jar:0.3.0:compile
[INFO] |  |  \- com.intel.analytics.bigdl.spark-version:2.0-SPARK_2.2:jar:0.3.0:compile
[INFO] |  \- org.json:json:jar:20180130:compile
[INFO] +- junit:junit:jar:4.12:test
[INFO] |  \- org.hamcrest:hamcrest-core:jar:1.3:test
[INFO] +- org.scalatest:scalatest_2.11:jar:2.2.6:test
[INFO] |  +- org.scala-lang:scala-reflect:jar:2.11.7:compile
[INFO] |  \- org.scala-lang.modules:scala-xml_2.11:jar:1.0.2:compile
[INFO] +- com.typesafe.scala-logging:scala-logging_2.11:jar:3.5.0:compile
[INFO] \- com.github.scopt:scopt_2.11:jar:3.5.0:compile
[INFO] ------------------------------------------------------------------------

Best,

Answer 7 · 2018-07-17T07:02:13.000Z

@GezimSejdiu what are the arguments your using when running the query example?

Answer 8 · 2018-07-17T07:59:55.000Z

Hi Lorenz,
since the SPARQL endpoint is exposed by default on the example, you just need to specify the input path (e.g -i src/main/resources/rdf.nt).

Answer 9 · 2018-07-17T09:47:30.000Z

For me it works in IDE, the only thing that I had to do is to fix the Jersey dependency to latest - there are as usual multiple version around due to dependencies...

Answer 10 · 2018-07-17T09:52:10.000Z

Many thanks, @LorenzBuehmann for solving the issue via Jersey dependency upgrade commit.

It is working for me as well.