Sbrussee

slideflow

Deep learning library for digital pathology, with both Tensorflow and PyTorch support.

CellGirAffE

Framework for testing Graph (Variational) AutoEncoder techniques for analyzing spatial transcriptomics data.

GenePredMissData

Code for the Gene function prediction with missing data project worked on by students from Hogeschool Leiden for TU-Delft.

HoloNetCaseStudy

Code for the VIB-UGent IRC project in which GNN-based methods are applied for inferring cellular communication from spatial transcriptomics daat

MF-CLAM

personal_projects

Code repository for personal coding projects, mostly in the field of bioinformatics/AI

slideflow_fork

Deep learning library for digital pathology, with both Tensorflow and PyTorch support.

Sbrussee/PathBench-MIL

PathBench-MIL: A comprehensive, flexible Benchmarking / AutoML framework for multiple instance learning in Histopathology

Sbrussee/MF_BID_MIL

Code for the prediction of MF/BID from skin histopathology images using multiple instance learning

Sbrussee/GenePredMissData

Code for the Gene function prediction with missing data project worked on by students from Hogeschool Leiden for TU-Delft.

Sbrussee/CellGirAffE

Framework for testing Graph (Variational) AutoEncoder techniques for analyzing spatial transcriptomics data.

Sbrussee/HoloNetCaseStudy

Code for the VIB-UGent IRC project in which GNN-based methods are applied for inferring cellular communication from spatial transcriptomics daat

Sbrussee/MF-CLAM

Sbrussee/personal_projects

Code repository for personal coding projects, mostly in the field of bioinformatics/AI

Sbrussee/slideflow_fork

Deep learning library for digital pathology, with both Tensorflow and PyTorch support.

Sbrussee/Sbrussee.github.io