ShawHahnLab/vquest

vquest.util.VquestError: Please provide your FASTA formatted sequences in the text area

Closed this issue · 3 comments

showteeth commented

I got an error when running vquest with following command:

vquest --species rhesus-monkey --receptorOrLocusType IG --fileSequences test.fasta
Traceback (most recent call last):
  File "/home/user/anaconda3/bin/vquest", line 8, in <module>
    sys.exit(main())
  File "/home/user/anaconda3/lib/python3.7/site-packages/vquest/__main__.py", line 51, in main
    output = request.vquest(config_full)
  File "/home/user/anaconda3/lib/python3.7/site-packages/vquest/request.py", line 68, in vquest
    raise VquestError("; ".join(errors), errors)
vquest.util.VquestError: Please provide your FASTA formatted sequences in the text area

I'm sure the file I entered is a FASTA file, this is my test file.

ressy commented

I see it too. I think it's because I'm not handling the chunking of sequences into sets of 50 quite right; it submits the first batch of 50 and then tries to submit a second batch with no sequences. I should have a fix for this shortly.

ressy commented

OK this should now be fixed in the dev branch here. You can install this one by removing yours and running pip install . with the latest dev code, or just give me a little time and I'll make this the new version 0.0.8 on pypi and then you can update it that way.

  • 👍1
ressy commented

All set! This fix is included in version 0.0.8 on PyPI now.

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