Pinned Repositories
Cookbook-for-R-Chinese
:books:Cookbook for R 中文翻译
UCSCXenaShiny
📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, https://shiny.zhoulab.ac.cn/UCSCXenaShiny
weekly
生信爱好者周刊（每周日发布）
UCSCXenaTools
:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
DoAbsolute
:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
Handbook_of_biostatistic_R
:green_book:handbook of biostatistic and R
install_GISTIC
Install GISTIC2 by one line code; GISTIC2 docker image
pybook
《交互的Python：数据分析入门》
self-study
My Self-Study Room: keep tidy and lightweight
sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
ShixiangWang's Repositories
ShixiangWang/sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
ShixiangWang/pybook
《交互的Python：数据分析入门》
ShixiangWang/install_GISTIC
Install GISTIC2 by one line code; GISTIC2 docker image
ShixiangWang/DoAbsolute
:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
ShixiangWang/self-study
My Self-Study Room: keep tidy and lightweight
ShixiangWang/sigflow
Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
ShixiangWang/ezcox
Easily Process a Batch of Cox Models
ShixiangWang/copynumber
The "copynumber" R package with support for hg38
ShixiangWang/gcap
GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles. https://shixiangwang.r-universe.dev/gcap
ShixiangWang/polar
polar: Dots and Their Connections in Polar Coordinate System
ShixiangWang/IDConverter
Convert Identifiers in Biological Databases
ShixiangWang/tinyscholar
A Tiny R Package to Get and Show Google Scholar Profile
ShixiangWang/gcap-wes
ShixiangWang/shinyapps
My Open-Source Shiny Apps - A Practice for Shiny https://shixiangwang.github.io/shinyapps/
ShixiangWang/gcaputils
Utils for GCAP package
ShixiangWang/ShixiangWang.github.io
https://shixiangwang.netlify.app/
ShixiangWang/cellscape
ShixiangWang/IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
ShixiangWang/bioc_coc_multilingual
Multilingual version of the Bioconductor Code of Conduct
ShixiangWang/bioconda-recipes
Conda recipes for the bioconda channel.
ShixiangWang/cdn
存档与CDN加速 https://zhuanlan.zhihu.com/p/76951130
ShixiangWang/cv-shixiang
Personal CV Rendered by Pagedown
ShixiangWang/dtdatasources
dtdatasources
ShixiangWang/facets
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
ShixiangWang/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
ShixiangWang/rwif
A playground for quick impl of some common utils
ShixiangWang/ShixiangWang
Shixiang Wang' GitHub Profile
ShixiangWang/shixiangwang.r-universe.dev
ShixiangWang/spladder
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
ShixiangWang/TCGAbiolinks
TCGAbiolinks