Genes
afitz-gmu opened this issue · 3 comments
Hi, I am looking through the new matrix of genes x expression uploaded to zenodo. I am noticing that I can't find some genes in that file that are located in your shinyapp. When I pull out all the first column gene names it only totals 4419 genes. I am wondering if only some of the data was uploaded or if this is a known problem.
Thanks!
Hello! This is because the matrix only contains the integrated data. If you download the .rds or .h5ad files you will have the complete objects there.
Thanks a lot for your interest in our work!
Hi, thanks so much for getting back to me. If I am looking for just one specific gene is there an easy way to manipulate these files for that gene? The files are so large that I'm having some issues. Thanks!
Hello, unfortunately, no, there is no easy way... However, if you just want to check the expression of that gene, you can visualize it using our Shiny App, otherwise if you need to extract raw/normalized counts for that gene(s), you will have to manipulate the whole object.