Single-Cell-Genomics-Group-CNAG-CRG/Tumor-Immune-Cell-Atlas

Trouble in reading CSV data

ZainulArifin1 opened this issue · 0 comments

ZainulArifin1 commented

Hi! I had some trouble in reading the TICAtlas_integrated_matrix.csv file mainly because of the file size. I have an R-studio server and I tried the following methods to input the data.

  1. read.csv (consumed too much memory)
  2. read_csv (data are parsed incorrectly)
  3. fread (data are parsed incorrectly)

What would you recommend doing to input the file into the R environment or is there an RDS file of the integrated data? Thank you.