error when loading TICAtlas.h5ad data

[Byronxy]

Hi,
I download the data from zenodo while I find the error when load data.

1. load data in R
   I use the following code:

Convert("~/software/TICAtlas.h5ad", dest = "h5seurat", overwrite = TRUE)
TICAtlas <- LoadH5Seurat("~/software/TICAtlas.h5seurat")

The error is
Validating h5Seurat file Initializing RNA with data Adding counts for RNA Adding scale.data for RNA Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent

2. load data in python
   I use the following code:

import scanpy as sc
adata = sc.read_h5ad("/export/bioinfo-team/home/xiongy/software/TICAtlas.h5ad")

The error is
ValueError: Variables annot. varmust have number of columns ofX (5000), but has 4997 rows.

[sialindskrog]

I got the same error.

However, it worked when only including the count and data assays (excluding the scale.data assay):
tica <- LoadH5Seurat("/Data/TICAtlas.h5seurat", assays = c("counts", "data"))

But a solution to load the entire dataset would of course be optimal.

[PaulaNietoG]

Hi! Thanks for letting us know! We are working on fixing this as soon as possible

[PaulaNietoG]

This should now be fixed in the latest Zenodo upload (https://doi.org/10.5281/zenodo.4036019)