MSig is empty

[mali-git]

MSig is empty (see msig.keen.summary.json) after installing the corresponding package thrugh the CLI: biokeen start

pip freeze: requirements.txt

Therefore, msig.keen.tsv will not be created and following exception will occur:

Traceback (most recent call last):
File "/Users/mali/development/virtual_envs/biokeen/bin/biokeen", line 10, in
sys.exit(main())
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/click/core.py", line 764, in call
return self.main(*args, **kwargs)
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/biokeen/cli/cli.py", line 62, in start
pykeen.run(config)
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/pykeen/run.py", line 136, in run
pipeline_results = pipeline.run()
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/pykeen/utilities/pipeline.py", line 78, in run
mapped_pos_train_triples = self._get_train_triples()
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/pykeen/utilities/pipeline.py", line 187, in _get_train_triples
train_pos = load_data(self.config[pkc.TRAINING_SET_PATH])
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/pykeen/utilities/pipeline.py", line 207, in load_data
for p in path
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/pykeen/utilities/pipeline.py", line 207, in
for p in path
File "/Users/mali/development/virtual_envs/biokeen/lib/python3.7/site-packages/pykeen/utilities/pipeline.py", line 213, in _load_data_helper
if path.startswith(f'{prefix}:'):
AttributeError: 'NoneType' object has no attribute 'startswith'