SoftwareUnderstanding/RSEF

Breaking error when processing paper

dgarijo opened this issue · 1 comments

When processing the following paper: rsef assess -i https://doi.org/10.1098/rsif.2022.0412 -U -B I get an incomplete JSON dumped, which corrupts the whole output. This is a bug.

{
    "RSEF Output": [
        {
            "title": "Learning anisotropic interaction rules from individual trajectories in a heterogeneous cellular population",
            "implementation_urls": [
                {
                    "identifier": "https://github.com/MathBioCU/WSINDy_CellCluster",
                    "type": "git",
                    "paper_frequency": 2,
                    "extraction_methods": [
                        {
                            "type": "regex",
                            "location": "",
                            "location_type": "",
                            "source": "",
                            "source_paragraph": ""
                        },
                        {
                            "type": "bidir",
                            "location": "RELATED_PAPERS",
                            "location_type": "ARXIV",
                            "source": "SOMEF",
                            "source_paragraph": ""
                        }
                    ]
                },
                {
                    "identifier": "https://github.com/MathBioCU/WSINDy",
                    "type": "git",
                    "paper_frequency": 1,
                    "extraction_methods": [

Fixed in #38