/multienrichjam

Analysis and Visualization of Multiple Gene Set Enrichments

Primary LanguageR

multienrichjam

The goal of multienrichjam is to implement MultiEnrichMap, an extension to EnrichMap and Enrichment Map, originally envisioned and implemented as a Cytoscape plugin by the lab of Dr. Gary Bader

and re-implemented into a larger analysis workflow in R by Dr. Guangchuang Yu in the R packages:

The MultiEnrichMap extension is a relatively straightforward set of functions to help enable comparison of enrichment results from multiple gene set enrichment tests.

Package Reference

A full online function reference is available via the pkgdown documentation:

Full multienrichjam command reference

How to install

Install using the R package remotes and this command:

remotes::install_github("jmw86069/multienrichjam",
   dependencies=TRUE);

If you do not have the remotes package, you can install it from CRAN:

install.packages("remotes");

Note that we changed the recommended installation from using devtools to using remotes because the remotes package is much smaller with fewer dependencies.