Gene Positions data for running inferCNV.

[purvapruthi]

Hello,

Thank you so much for providing this data. I am new to the field of single-cell analysis. So, this might be a naive question. I was looking to reproduce the inferCNV pipeline and was wondering where can I get the gene positions file: infercnv_gene_order.txt.

Thanks.

[johnyaku]

Hi @purvapruthi.

I've added infercnv_gene_order.txt to inferCNV/refs.

You'll need to adapt the ref_dir variable to your own system in order to get the code to run.