Pinned Repositories
agrenseq_snakemake
Snakemake pipeline for agrenseq, WIP!
AOC2015
Advent of code 2015
assembly_olympics
Snakemake workflow to consolidate basic genome assembly benchmarking
assembly_statistics
Small rust program to calculate assembly statistics
bioconda-recipes
Conda recipes for the bioconda channel.
deepsignal-plant
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
HISS
A suite of workflows for various RenSeq methods
pangenomics
resistify
Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightweight and easy to use.
SwiftSeal's Repositories
SwiftSeal/resistify
Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightweight and easy to use.
SwiftSeal/HISS
A suite of workflows for various RenSeq methods
SwiftSeal/pangenomics
SwiftSeal/agrenseq_snakemake
Snakemake pipeline for agrenseq, WIP!
SwiftSeal/AOC2015
Advent of code 2015
SwiftSeal/assembly_olympics
Snakemake workflow to consolidate basic genome assembly benchmarking
SwiftSeal/assembly_statistics
Small rust program to calculate assembly statistics
SwiftSeal/bioconda-recipes
Conda recipes for the bioconda channel.
SwiftSeal/deepsignal-plant
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
SwiftSeal/DNA64
Small .py script for translating any file into a .fasta file format, and back again
SwiftSeal/DNA64web
SwiftSeal/h2_analysis
SwiftSeal/hpc-help
Help documentation for https://help.cropdiversity.ac.uk
SwiftSeal/metagenomics_analysis
All code used for Lia Frost's Gatsby summer project 2023
SwiftSeal/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
SwiftSeal/nfHISS
Just learning some nextflow...
SwiftSeal/NLRexpress
SwiftSeal/pysnailplot
A python program to generate blobtoolkit "snail plots"
SwiftSeal/renseq_mapping
A pipeline for analysising SNPs in RenSeq mapping populations
SwiftSeal/renseq_variant_analysis
Lightweight snakemake for gatk analysis of hifi renseq data
SwiftSeal/swiftseal.github.io
SwiftSeal/tide_eink
SwiftSeal/TRASH
RepeatIdentifier
SwiftSeal/vikrant_assembly
Scripts and stuff necessary for the dihaploid genome assembly and analysis