Bug: Filter proteomics only return one column, despite there are 3 conditions

[ae-tafur]

At this point filtering proteomics data contains many columns as many conditions, but this line only returns one column. This because the index inside parenthesis it is only for rows, must be filtAbund(m,n),

GECKO/src/geckomat/utilities/integrate_proteomics/loadProtData.m

Line 144 in 1710a98

protData.abundances = filtAbund(notAllNan);

Then, this line should be:

protData.abundances = filtAbund(notAllNan, :);

to return one column per condition

[edkerk]

And line 140

GECKO/src/geckomat/utilities/integrate_proteomics/loadProtData.m

Line 140 in 1710a98

filtAbund(:,1) = mean(condAbund,2,'omitnan');

should be

filtAbund(:,i) = mean(condAbund,2,'omitnan');

right?

[ae-tafur]

right?

You are right