THUDM/ProteinLM

Extracting Embedding

funihang opened this issue · 1 comments

Hello,

I found a similar issue ( #5), but when I try to extract the embedding according to your instruction, the dimension of the transformer_output doesn't seem to fit the input. The dimension of the transformer_output is like [micro-batch-size, max seg length, hidden size], but how does this output match the input? I checked the bert model and its output should be like output1, output2. The output2 is the embedding that can match the input. But in your code, the output2 is None. I wonder how we can get the embedding corresponding to the inputs.

Thanks

Hello @funihang ,

Sorry for the late reply.

Thanks for bringing this up. I cannot find a variable named output2 in the transformer.py file. So I am not sure which variable you are referring to. Please specify.


Best,
Yijia