TORCH-Consortium/MAGMA

Structural variants workflow only on samples that passed QC

LennertVerboven opened this issue · 1 comments

LennertVerboven commented

@abhi18av @TimHHH

MAGMA/main.nf

Line 63 in b218fb6

STRUCTURAL_VARIANTS_ANALYSIS_WF ( validated_reads_ch )

The structural variant workflow should only be run for samples that passed QC as delly crashes if your sample has less than 10K mapped reads

TimHHH commented

I am glad you figured that one out 👍