The-Sequence-Ontology/SO-Ontologies

Issues

• Variants resulting in a decrease or complete loss of enzymatic activity but causing an increase in pathway activity

  #651 opened a month ago by dsonkin
  0

• promoter_variant

  #635 opened a year ago by CristianRiccio
  2

• mitochondrial_targeting_signal (SO:0001808)

  #650 opened 3 months ago by ValWood
  0

• NTR: oncogenic_variant

  #643 opened 6 months ago by drobbarfield
  2

• NTR: switch_of_function_variant

  #642 opened a year ago by drobbarfield
  2

• NTR: CDS_variant

  #641 opened a year ago by CristianRiccio
  1

• NTR: miRNA_variant

  #644 opened a year ago by CristianRiccio
  1

• stop_codon_variant

  #638 opened a year ago by CristianRiccio
  1

• enhancer_variant

  #639 opened a year ago by CristianRiccio
  1

• polyA_signal_sequence_variant

  #636 opened a year ago by CristianRiccio
  1

• start_codon_variant

  #637 opened a year ago by CristianRiccio
  1

• branch_site_variant

  #634 opened a year ago by CristianRiccio
  1

• protein_coding_variant

  #631 opened a year ago by CristianRiccio
  1

• miRNA_target_site_variant

  #633 opened a year ago by CristianRiccio
  1

• Requesting the SO term "miRNA_variant"

  #617 opened a year ago by CristianRiccio
  1

• non_protein_coding_variant

  #630 opened a year ago by CristianRiccio
  1

• Request of the SO term "start_gained"

  #615 opened a year ago by CristianRiccio
  1

• SO sponsorship for submission of bioinformatics file formats for IANA Media Types ("MIME") registry?

  #646 opened 8 months ago by photocyte
  2

• NTR: Nucleosome_occupancy

  #645 opened 8 months ago by aboyd003
  1

• NTR: range extender element

  #649 opened 6 months ago by cmungall
  3

• Fix definition of miRNA (SO:0000276)

  #648 opened 6 months ago by dbolser
  1

• uORF - stop loss variant

  #623 opened 7 months ago by sarahhunt
  2

• uORF - stop gained variant

  #624 opened 7 months ago by sarahhunt
  2

• uORF - frameshift variant

  #621 opened 7 months ago by sarahhunt
  1

• uORF - stop codon variant

  #622 opened 7 months ago by sarahhunt
  1

• 5_prime_UTR_uORF_variant

  #647 opened 7 months ago by sarahhunt
  1

• New grouping term for regulatory non-coding RNAs

  #616 opened a year ago by pgaudet
  3

• Add "constitutively activating variant" as a subclass of "gain_of_function_variant"

  #625 opened a year ago by ppavlidis
  2

• NTR: c_terminal_region_variant

  #640 opened a year ago by jl-gel
  0

• What's so special about splice_donor_5th_base_variant?

  #619 opened a year ago by jeff-mandell
  4

• uORF_variant

  #632 opened a year ago by CristianRiccio
  0

• Change 5_prime_UTR_variant to five_prime_UTR_variant

  #628 opened a year ago by CristianRiccio
  0

• Change 3_prime_UTR_variant to three_prime_UTR_variant

  #629 opened a year ago by CristianRiccio
  0

• uAUG_lost - AUG lost variant

  #627 opened a year ago by CristianRiccio
  0

• uAUG_gained - AUG gained variant

  #626 opened a year ago by CristianRiccio
  0

• SO home page appears to be down

  #620 opened a year ago by tommystanton
  2

• Unclear grammar of terminator (SO:0000141)

  #618 opened a year ago by greg-sharpe
  0

• purls redirect to ontobee does not seem to be working

  #614 opened a year ago by shawntanzk
  1

• Update definitions for decreased_gene_product_level (SO:0002316) and increased_gene_product_level (SO:0002315)

  #612 opened 2 years ago by davidwsant
  3

• fix def SO:0001877 lncRNA

  #611 opened 2 years ago by ValWood
  5

• circular_ncRNA_gene

  #610 opened 2 years ago by sophiayzhu
  0

• NTR: centromeric_transcript

  #609 opened 2 years ago by ValWood
  0

• Use RO or SO numeric identifiers for properties

  #608 opened 2 years ago by balhoff
  3

• Version the ontology periodically

  #606 opened 2 years ago by ireneisdoomed
  2

• Historical versions of SO

  #607 opened 2 years ago by deepakunni3
  2

• Change name UNAAAC_motif

  #605 opened 2 years ago by ValWood
  0

• NTR: serum_response_element

  #602 opened 2 years ago by RLovering
  0

• NTR: vitamin_D_response_element

  #601 opened 2 years ago by RLovering
  0

• NTR: cAMP_response_element

  #600 opened 2 years ago by RLovering
  0

• N_box_motif

  #599 opened 2 years ago by RLovering
  0