Length scale
Opened this issue · 3 comments
mxh-persist commented
Hello, can you add a chromosome length ruler to this R package?
TickingClock1992 commented
Hello, I modified the current version and added this function. You can set the ruler by the parameter Ruler = 50
, meaning the bin of 50 Mb. The default number of tick is five, in this case: 0Mb, 50Mb, 100Mb, 150Mb, 200Mb.
You can download this testing version at https://github.com/TickingClock1992/RIdeogram_test/blob/master/RIdeogram_0.2.3.tar.gz and install this version in a local way.
Running the command as follows:
library("RIdeogram")
ideogram(karyotype = human_karyotype, overlaid = gene_density, Ruler = 50)
convertSVG("chromosome.svg", device = "png")
mxh-persist commented
TickingClock1992 commented
Sorry, I have updated the temporary package to fix this problem. You can download this testing version and try again. However, the chromosome ruler doesn't work for the synteny plotting.