Install request: HISAT2 Version 2.2.1 [IN05990975]
Opened this issue · 9 comments
HISAT2 (fast and sensitive alignment program for mapping next-generation sequencing reads) on Myriad
http://daehwankimlab.github.io/hisat2/
Installation instructions here: http://daehwankimlab.github.io/hisat2/manual/
I'm going to see if this is quick to do. If so, I'm going to build it on Myriad using the build scripts method.
A test compile in my Scratch appears to have worked without errors.
I'm going to produce a build script for HISAT2 this morning.
Build script done and run on Myriad from ccspapp account:
module -f unload compilers mpi
./HISAT2-2.2.1_install
This seems to install correctly so now producing a module file.
Slight problem I seem to have built it with the wrong version of GCC. Fixing build script.
Had to edit the Mafile in the build script to stop it using /bin/g++ Now correctly using GCC 4.9.2.
Now ready for user testing.
Use the following module commands to access it:
module load python3/recommended
module load hisat2/2.2.1/gnu-4.9.2
User informed.