Reading Siemens normalisation
PaulClegg opened this issue · 1 comments
PaulClegg commented
On reading biograph mMR normalisation files - I see:
WARNING: KeyParser warning: unrecognized keyword: %comment
WARNING: KeyParser warning: unrecognized keyword: %study date (yyyy:mm:dd)
WARNING: KeyParser warning: unrecognized keyword: %study time (hh:mm:ss gmt+00:00)
WARNING: KeyParser warning: unrecognized keyword: %patient orientation
WARNING: KeyParser warning: unrecognized keyword: end horizontal bed position (mm)
WARNING: KeyParser warning: unrecognized keyword: total number of data sets
WARNING: KeyParser warning: unrecognized keyword: %supplementary attributes
WARNING: KeyParser warning: unrecognized keyword: slice orientation
WARNING: KeyParser warning: unrecognized keyword: %image zoom
WARNING: KeyParser warning: unrecognized keyword: %x-offset (mm)
WARNING: KeyParser warning: unrecognized keyword: %y-offset (mm)
WARNING: KeyParser warning: unrecognized keyword: %image slope
WARNING: KeyParser warning: unrecognized keyword: %image intercept
WARNING: RadioNuclideDB::get_radionuclide: unknown modality. Returning "unknown" radionuclide.
KrisThielemans commented
I think this is when reading the mu-map. The keywords are ignored for the norm, and these are from an image header.
We don't properly read Siemens Interfile images ATM #196 , so we run a basic textual conversion (convertSiemensToInterfile.sh) which leaves all these keywords present.
Please confirm and close if I'm correct.