Missing nc_inq_filter_avail HDF4 1.10.7 & netcdf 4.8.1
snowman2 opened this issue · 3 comments
snowman2 commented
netCDF4-python==1.6.1
reading from setup.cfg...
using nc-config...
checking /usr/include ...
hdf5 headers not found in /usr/include
checking /usr/include/hdf5/serial ...
HDF5 library version: 1.10.7 headers found in /usr/include/hdf5/serial
using netcdf library version b'4.8.1'
using Cython to compile netCDF4.pyx...
netcdf lib has group rename capability
netcdf lib has nc_inq_path function
netcdf lib has nc_inq_format_extended function
netcdf lib has nc_open_mem function
netcdf lib has nc_create_mem function
netcdf lib has cdf-5 format capability
netcdf lib does not have netcdf4 parallel functions
netcdf lib does not have pnetcdf parallel functions
netcdf lib does not have bit-grooming/quantization functions
netcdf lib does not have zstandard compression functions
netcdf lib does not have bzip2 compression functions
netcdf lib does not have blosc compression functions
netcdf lib has szip compression functions
netcdf lib does not have nc_set_alignment function
NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed
/opt/venv/lib/python3.9/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
running install
/opt/venv/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-39
creating build/lib.linux-x86_64-cpython-39/netCDF4
copying src/netCDF4/__init__.py -> build/lib.linux-x86_64-cpython-39/netCDF4
copying src/netCDF4/utils.py -> build/lib.linux-x86_64-cpython-39/netCDF4
running build_ext
cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c
Error compiling Cython file:
------------------------------------------------------------
...
**`has_szip_filter(self)`**
returns True if szip compression filter is available"""
cdef int ierr
IF HAS_SZIP_SUPPORT:
with nogil:
ierr = nc_inq_filter_avail(self._grpid, H5Z_FILTER_SZIP)