Pinned Repositories
citacni-software
Přednáška o citačním software pro bakalářský projekt na PřF UK.
course-linux-command-line-bash-scripting-metacentrum
Don’t be afraid of command line! It is friendly and powerful tool allowing to process large data and automate tasks. Practically identical is command line also in Apple osX, BSD and another UNIX-based systems, not only in Linux. The course is designed for total beginners as well as intermediate advanced students. The only requirement is an interest (or need) to work in command line, typically on Linux computing server.
course-r-mol-data
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
hybseq-course
Materials for course about processing HybSeq data on computing grids
hybseq-scripts
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
kdetrees
R package for identifying discordant phylogenetic trees in a sample
RAD-Seq-scripts
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
sondovac
Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
structure-multi-pbspro
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
translate-po-openai-api
Script to use the OpenAI GPT-3.5 API to translate PO files
V-Z's Repositories
V-Z/course-r-mol-data
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
V-Z/sondovac
Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
V-Z/course-linux-command-line-bash-scripting-metacentrum
Don’t be afraid of command line! It is friendly and powerful tool allowing to process large data and automate tasks. Practically identical is command line also in Apple osX, BSD and another UNIX-based systems, not only in Linux. The course is designed for total beginners as well as intermediate advanced students. The only requirement is an interest (or need) to work in command line, typically on Linux computing server.
V-Z/hybseq-scripts
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
V-Z/translate-po-openai-api
Script to use the OpenAI GPT-3.5 API to translate PO files
V-Z/structure-multi-pbspro
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
V-Z/citacni-software
Přednáška o citačním software pro bakalářský projekt na PřF UK.
V-Z/hybseq-course
Materials for course about processing HybSeq data on computing grids
V-Z/kdetrees
R package for identifying discordant phylogenetic trees in a sample
V-Z/RAD-Seq-scripts
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
V-Z/skautska-vychovna-metoda
Semináře o skautské výchovné metodě na KDF MFF UK.
V-Z/structure-sum
Script to summarize the results from several structure runs
V-Z/TreeShrink
Implementation of the TreeShrink problem