Issues
- 0
`ascat.aspcf` step gives error
#183 opened by bounlu - 3
- 0
Tumor_LogR, Tumor_BAF files with multiple tumor samples and single matched normal sample for use with ascat.asmultipcf()?
#181 opened by agorelick - 1
Minor copy number is -1
#179 opened by tbrendlerspaeth - 0
LogR correction, 10% overlap check
#180 opened by maartenvanelst - 2
How to choose input SNPs for ASCAT?
#178 opened by bounlu - 3
LogR calculation for tumor-only WES
#177 opened by berguner - 10
ASCAT could not find an optimal ploidy and purity value for sample logR.
#174 opened by nandakumaryellapu - 1
Error in !is.null(homsegs) && !is.na(homsegs)
#175 opened by duanshumeng - 2
`ascat.runAscat` raw and ASCAT profile plots show different chromosome widths
#176 opened by MikeWLloyd - 2
`ascat.runAscat` "vector size cannot be NA/NaN" and/or "subscript out of bounds"
#173 opened by MikeWLloyd - 1
Error in function make_segments
#171 opened by psuarezana - 5
Error when running on WES data
#168 opened by CHENAO-QIAN - 11
ascat.prepareHTS ERROR in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : line 1 did not have 4 elements
#172 opened by tanayb001 - 2
Problem in createReplicTimingFile.R
#169 opened by giorgiabiddau - 2
Error in !is.null(homsegs) && !is.na(homsegs) :
#166 opened by mital14 - 3
ASCAT could not find an optimal ploidy and purity value
#165 opened by Coaxecva - 2
Confusion about GC and RT correction
#170 opened by CHENAO-QIAN - 2
Error in NORMAL_COUNTS_tot
#167 opened by bwubb - 2
Error in !is.null(homsegs) && !is.na(homsegs)
#163 opened by wir963 - 2
No differences before and after LogR correction
#164 opened by star0044 - 3
- 6
ASCAT could not find an optimal ploidy and purity value for sample
#162 opened by mariaalexandrastanciu - 2
Could not find optimal ploidy and purity
#160 opened by albamasmalavila - 3
Output query: Tissue samples have very high purity
#157 opened by kane9530 - 1
Question regarding reference files
#159 opened by teodorabu - 1
Questions About WES
#158 opened by WH-TEMP - 1
ascat output
#156 opened by albamasmalavila - 2
How to use ascat to call wes CNV
#155 opened by lh12565 - 6
Problem with ascat.prepareTargetedSeq
#154 opened by h170607 - 2
- 3
Question about segments file: nmajor =0 and nminor>0
#150 opened by kane9530 - 18
ASCAT could not find an optimal ploidy and purity value for sample BEL_20C.
#148 opened by chengwenxuan1997 - 2
Allele file
#149 opened by jffpviana - 1
whether to remove duplicate reads
#146 opened by chengwenxuan1997 - 1
Jointly use sWGS and WES data
#147 opened by WangKang-Leo - 3
readAllelesFiles throws error
#145 opened by liannesuurenbroek - 2
BED file for WES data
#143 opened by mybabyfox - 1
- 4
Warning with R 4.2.2
#142 opened by kw10 - 16
ERRER with "ascat.prepareHTS"
#140 opened by duanshumeng - 1
Install ASCAT 3.1.1 with conda
#141 opened by ThibautMatis - 1
Tumor-only mode
#139 opened by suyanxun - 3
non-human genome
#136 opened by gbnci - 1
How can I use ascat.prepareHTS to get the LogR and BAF file for tumor-only samples?
#138 opened by suyanxun - 2
ascat.plotRawData picking up whole path, not filename
#135 opened by anndalf - 4
- 4
Number of markers per segment
#133 opened by kw10 - 1
ASCAT run without matched normal data
#131 opened by fuzhiliang - 2
Loci and allele file missing for sex chromosomes WES (hg19 battenberg reference files)
#132 opened by Indianhedgehog