Pinned Repositories
arcMS
Mass spectrometry data converter from UNIFI to Parquet and HDF5 formats
Book_NTA-HRMS
Book on nontarget and suspect screening using HRMS
ComplexHeatmap
Make Complex Heatmaps
CompoundDb
Creating and using (chemical) compound databases
Course_R_for_environ_chem_data_analysis
PhD course in R4ECDA
CP-Crawler
Chlorinated paraffin pattern reconstruction code (in R)
CP-Seeker
CP-Seeker is dedicated to the post-acquisition processing, visualization and analysis of ion signals from polychlorinated alkanes (PCAs) and related chemical families within chromatography–high resolution mass spectrometry (HRMS) data sets.
CP_website
MSxplorer
visNetwork
R package, using vis.js library for network visualization
WBS-TW's Repositories
WBS-TW/arcMS
Mass spectrometry data converter from UNIFI to Parquet and HDF5 formats
WBS-TW/MSxplorer
WBS-TW/Book_NTA-HRMS
Book on nontarget and suspect screening using HRMS
WBS-TW/CompoundDb
Creating and using (chemical) compound databases
WBS-TW/Course_R_for_environ_chem_data_analysis
PhD course in R4ECDA
WBS-TW/CPquant
Interactive quantification of CPs using R Shiny
WBS-TW/enviPat
Isotope fine structure calculation - R package
WBS-TW/deimos
WBS-TW/dimspec
The Database Infrastructure for Mass Spectrometry (DIMSpec) project
WBS-TW/enviPick
Peak picking in LC-HRMS data - R package
WBS-TW/erah-devel
eRah development version. For downloads, please use CRAN
WBS-TW/Fourier_Transform
shiny app for AC3.0
WBS-TW/HRMS-SSANTA
Bookdown
WBS-TW/MDPlotR
Using Shiny to analyze MS data by mass defect plots
WBS-TW/Met4DX
WBS-TW/metabolome-lipidome-MSDIAL
Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.
WBS-TW/ms-pred
Predicting tandem mass spectra from molecules
WBS-TW/MS2Quant
WBS-TW/MSMetaEnhancer
Tool for mass spectra metadata annotation.
WBS-TW/nontarget
Isotope & adduct peak grouping, homologue series detection - R package
WBS-TW/Oligomer-Finder
Oligomer-Finder is a program for seed molecule guided oligomers screened and annotation for MS/MS data.
WBS-TW/PeakDecoder
A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
WBS-TW/Project_CPs
WBS-TW/RawFileReader
From the article: A guide to precise measurements of isotope abundance by ESI-Orbitrap MS
WBS-TW/SigmaCCS
Highly accurate and large-scale collision cross section prediction with graph neural network for compound identification
WBS-TW/subformula_graph
A loose collection of modules which can read mass spectral data (EI-MS or MS/MS), produce a ranked list of formula annotations using the parent subformula graph (PSG) method, and then for every (possible) mass peak in the mass spectrum, visualise the annotated mass spectrum as a 2 dimensional fragment plot.
WBS-TW/TESTquartoWEBSITE
testing quarto webpage
WBS-TW/toxpiR
toxpiR R package for the Toxicological Priority Index (ToxPi) algorithm.
WBS-TW/vicer_R4EnvChemAnalysis
WBS-TW/Website_CPSAs_human_exposure
Website for the CPSAs project