Worcester Image Data Management
The UMass Chan Medical School Research Data Management 4 Microscopy Image Data Group
University of Massachusetts Medical School, Worcester, MA
Pinned Repositories
4DNMetadataSchemaXSD2JSONConverter
This is a converter written in Java that translates an XSD microscopy metadata schema into JSON
4DNMicroscopyMetadataTool
A interactive and intuitive tool for the collection and reporting of microscopy metadata
MicroMetaApp-docs
Micro-Meta App documentation.
MicroMetaApp-Electron
Electron wrapped, stand-alone version of Micro-Meta App, microscopy metadata for the real world!
MicroMetaApp-Omero
This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client
MicroMetaApp-React
This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!
MicroMetaApp.github.io
Microscopy Metadata for the real world!
NBO-Q_MicroscopyGlossary
4DN-BINA-OME-QUAREP Microscopy Glossary
NBOMicroscopyMetadataSpecs
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
W-IDM_OmeroImporterPy
This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO
Worcester Image Data Management's Repositories
WU-BIMAC/NBOMicroscopyMetadataSpecs
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
WU-BIMAC/MicroMetaApp-Electron
Electron wrapped, stand-alone version of Micro-Meta App, microscopy metadata for the real world!
WU-BIMAC/MicroMetaApp-React
This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!
WU-BIMAC/MicroMetaApp-Omero
This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client
WU-BIMAC/MicroMetaApp.github.io
Microscopy Metadata for the real world!
WU-BIMAC/4DNMetadataSchemaXSD2JSONConverter
This is a converter written in Java that translates an XSD microscopy metadata schema into JSON
WU-BIMAC/W-IDM_OmeroImporterPy
This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO
WU-BIMAC/4DNMicroscopyMetadataTool
A interactive and intuitive tool for the collection and reporting of microscopy metadata
WU-BIMAC/W-IDM_OmeroDataWriter
This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
WU-BIMAC/W-IDM_OmeroImporter
This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
WU-BIMAC/MicroMetaApp-docs
Micro-Meta App documentation.
WU-BIMAC/OmeroImporterPy-docs
This is the documentation for the OMERO Importer Python tool.
WU-BIMAC/W-IDM_OmeroImporterExcelHelperPy
This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.
WU-BIMAC/NBO-Q_MicroscopyGlossary
4DN-BINA-OME-QUAREP Microscopy Glossary
WU-BIMAC/4DNMicroscopyMetadataReader
This JAVA software uses the Bio-Formats library to accesses OME-compatible metadata present in the header of a user-selected image data file.
WU-BIMAC/MicroMetaExplorer
Micro-Meta Explorer is used to compare and explore different Micro-Meta App generated microscope hardware JSON files
WU-BIMAC/MicroscopyMetadata4DNGuidelines