WansonChoi/CookHLA

some errors happen when I run your example code

Opened this issue · 1 comments

1511878618 commented

image

i just used your example code, and raise errors like picture above. 
python -m MakeGeneticMap \
    -i example/1958BC.hg19 \
    -hg 19 \
    -ref 1000G_REF/1000G_REF.EUR.chr6.hg18.29mb-34mb.inT1DGC \
    -o MyAGM/1958BC+1000G_REF.EUR

and also an error happens when i run this (used genetic map file your guys put in example file) example code, like below

python CookHLA.py -i example/1958BC.hg19 -hg 19 -o MyHLAImputation/1958BC+HM_CEU_REF -ref example/HM_CEU_REF -gm example/AGM.1958BC+HM_CEU_REF.mach_step.avg.clpsB -ae example/AGM.1958BC+HM_CEU_REF.aver.erate

image

Thx a lot if you can help me.

KajBro commented

Any solution to this? I have the same issue!