WendyBu

WendyBu's Stars

• davetang/cv

  My curriculum vitae

  Language:HTML101

• pezmaster31/bamtools

  C++ API & command-line toolkit for working with BAM data

  Language:C++415152

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k332

• BioInfoTools/BBMap

  (Not Offical) BBMap short read aligner, and other bioinformatic tools.

  Language:Java208111

• CGATOxford/UMI-tools

  Tools for handling Unique Molecular Identifiers in NGS data sets

  Language:Python482190

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java973370

• ucscXena/ucsc-xena-client

  Functional genomics browser

  Language:JavaScript5742

• Zhang-lab/ATAC-seq_QC_analysis

  Atac-seq QC matrix

  Language:Shell1518

• stjudecloud/docs

  Documentation on St. Jude Cloud.

  Language:Shell76

• cmap/cmapR

  Tools for manipulating annotated data matrices

  Language:R8434

• ChangLab/FAST-iCLIP

  Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

  Language:Jupyter Notebook2115

• macs3-project/MACS

  MACS -- Model-based Analysis of ChIP-Seq

  Language:Cython700268

• c-guzman/cipher-workflow-platform

  A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.

  Language:C++195

• TransDecoder/TransDecoder

  TransDecoder source

  Language:Perl26859

• bioinformatics-core-shared-training/microarray-analysis

  Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)

  Language:HTML5425

• FelixKrueger/TrimGalore

  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

  Language:Perl463151

• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

  Language:Python514129

• pcingola/BigDataScript

  BigDataScript: Scirpting language for big data

  Language:Shell9221

• chrisprobert/TF_chipseq_pipeline

  AQUAS TF ChIP-seq pipeline

  Language:Java2

• kundajelab/dragonn

  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

  Language:Jupyter Notebook25471

• vdumoulin/conv_arithmetic

  A technical report on convolution arithmetic in the context of deep learning

  Language:TeX14k2.3k

• WGLab/PennCNV2

  A software package for detection of copy number alterations from tumor samples

  Language:C++123

• QBRC/PIPE-CLIP

  Language:Python108

• cBioPortal/cbioportal

  cBioPortal for Cancer Genomics

  Language:Java628480

• cytoscape/cytoscape.js

  Graph theory (network) library for visualisation and analysis

  Language:JavaScript10k1.6k

• prog4biol/pfb2017

  Language:HTML2128

• MorvanZhou/Reinforcement-learning-with-tensorflow

  Simple Reinforcement learning tutorials, 莫烦Python 中文AI教学

  Language:Python8.9k5k

• pandas-dev/pandas

  Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

  Language:Python43.4k17.8k

• gutfeeling/beginner_nlp

  A curated list of beginner resources in Natural Language Processing

  38582

• Shujian2015/FreeML

  A List of Data Science/Machine Learning Resources (Mostly Free)

  1.1k520