WerthPADOH/naaccr

Handle site-specific codes in fields

WerthPADOH opened this issue · 4 comments

WerthPADOH commented

Codes in some fields are interpreted differently depending on the tumor's site. Wherever it makes sense, use the tumor data to replace these alphanumerical codes with English phrases. Prioritize fields which are still recommended by NAACCR. Leave alone fields where English phrases wouldn't add much value.

WerthPADOH commented

Awesome! I had no idea CS had their site-specific factors in XML files. Thanks!

WerthPADOH commented

Site-specific fields (related bundled together):

  • schemaId, schemaDiscriminator1, schemaDiscriminator2, schemaDiscriminator3
  • rxHospSurgPrimSite, rxHospSurgSite9802, rxHospScopeReg9802, rxHospSurgOth9802, rxSummSurgPrimSite, rxSummSurgicalApproch, rxSummReconstruct1st, rxSummSurgSite9802, rxSummScopeReg9802, rxSummSurgOth9802
  • eodPrimaryTumor, eodRegionalNodes, eodExtension, eodMets, eodExtensionProstPath, eodLymphNodeInvolv, eodOld13Digit, eodOld2Digit, eodOld4Digit, eodTumorSize, derivedEod2018T, derivedEod2018M, derivedEod2018N, derivedEod2018StageGroup
  • tnmPathT, tnmPathN, tnmPathM, tnmPathStageGroup, tnmClinT, tnmClinN, tnmClinM, tnmClinStageGroup
  • ajccId, ajccTnmClinT, ajccTnmClinN, ajccTnmClinM, ajccTnmClinStageGroup, ajccTnmPathT, ajccTnmPathN, ajccTnmPathM, ajccTnmPathStageGroup, ajccTnmPostTherapyT, ajccTnmPostTherapyN, ajccTnmPostTherapyM, ajccTnmPostTherapyStageGroup
  • derivedAjcc6T, derivedAjcc6N, derivedAjcc6M, derivedAjcc6StageGrp, derivedAjcc7T, derivedAjcc7N, derivedAjcc7M, derivedAjcc7StageGrp, derivedPrerx7T, derivedPrerx7N, derivedPrerx7M, derivedPrerx7StageGrp, derivedPostrx7T, derivedPostrx7N, derivedPostrx7M, derivedPostrx7StgeGrp
  • csTumorSize, csExtension, csTumorSizeExtEval, csLymphNodes, csLymphNodesEval, csMetsAtDx, csMetsAtDxBone, csMetsAtDxBrain, csMetsAtDxLiver, csMetsAtDxLung, csMetsEval
  • csSiteSpecificFactor1 through csSiteSpecificFactor25
  • derivedSeerCombinedT, derivedSeerCombinedN, derivedSeerCombinedM
  • npcrDerivedAjcc8TnmClinStgGrp, npcrDerivedAjcc8TnmPathStgGrp, npcrDerivedAjcc8TnmPostStgGrp, npcrDerivedClinStgGrp, npcrDerivedPathStgGrp
  • seerSiteSpecificFact1 through seerSiteSpecificFact6
  • gradeClinical, gradePathological, gradePostTherapy
  • prostatePathologicalExtension
WerthPADOH commented

Closed until #38 is resolved for AJCC, since they hold the copyright for most of this data.

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