str LD

Question

str LD

lihaicheng7003 opened this issue a year ago · 1 comments

I noticed that you have a script called get_SNP_STR_LD.v2.py for calculating linkage disequilibrium (LD) between str and snp. Could you provide an example format for the str? I happen to be dealing with a similar issue recently.

Answer 1 · 2023-12-08T02:19:19.000Z

I'm struggling with the situation where 'STR dosages (sum of the two repeat allele lengths)' are used. In this context, there might be cases like [17,16] and [18,15], where the sums are the same.