undefined symbol: _ZNK5boost10filesystem4path7stem_v3Ev
Closed this issue · 3 comments
gareth-anthony-hulse commented
NextPNR fails to find a Boost symbol with iCE40 and ECP5. Don't know about the others. I am using nextpnr-git 0.6.r100.g8e84006e-1.
ECP5:
nextpnr-ecp5: symbol lookup error: nextpnr-ecp5: undefined symbol: _ZNK5boost10filesystem4path7stem_v3Ev
make: *** [Makefile:10: blinky_out.config] Error 127
iCE40:
nextpnr-ice40: symbol lookup error: nextpnr-ice40: undefined symbol: _ZNK5boost10filesystem4path7stem_v3Ev
make: *** [Makefile:11: /home/gareth-anthony-hulse/Projects/gateware/lattice-ice40hx-8k-example/build/lattice-ice40hx-8k-example.asc] Error 127
I am using Antergos Linux, but the repos have been changed to Arch Linux.
Specs: https://linux-hardware.org/?probe=92b98e9789
gareth-anthony-hulse commented
@rowanG077 I tried building and installing Boost from source, but still got the same error messages.
output of gcc -xc -E -v -:
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
Target: x86_64-pc-linux-gnu
Configured with: /build/gcc/src/gcc/configure --enable-languages=ada,c,c++,d,fortran,go,lto,m2,objc,obj-c++ --enable-bootstrap --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --with-build-config=bootstrap-lto --with-linker-hash-style=gnu --with-system-zlib --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-libstdcxx-backtrace --enable-link-serialization=1 --enable-linker-build-id --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --disable-libssp --disable-libstdcxx-pch --disable-werror
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.2.1 20230801 (GCC)
COLLECT_GCC_OPTIONS='-E' '-v' '-mtune=generic' '-march=x86-64'
/usr/lib/gcc/x86_64-pc-linux-gnu/13.2.1/cc1 -E -quiet -v - -mtune=generic -march=x86-64 -dumpbase -
ignoring nonexistent directory "/usr/lib/gcc/x86_64-pc-linux-gnu/13.2.1/../../../../x86_64-pc-linux-gnu/include"
#include "..." search starts here:
#include <...> search starts here:
/usr/lib/gcc/x86_64-pc-linux-gnu/13.2.1/include
/usr/local/include
/usr/lib/gcc/x86_64-pc-linux-gnu/13.2.1/include-fixed
/usr/include
End of search list.
Output of ldd /usr/bin/nextpnr-ice40:
linux-vdso.so.1 (0x00007fff0f0c2000)
libboost_filesystem.so.1.85.0 => /usr/local/lib/libboost_filesystem.so.1.85.0 (0x00007dce37719000)
libboost_program_options.so.1.85.0 => /usr/local/lib/libboost_program_options.so.1.85.0 (0x00007dce376ae000)
libboost_thread.so.1.85.0 => /usr/local/lib/libboost_thread.so.1.85.0 (0x00007dce37690000)
libpython3.11.so.1.0 => /usr/lib/libpython3.11.so.1.0 (0x00007dce29000000)
libQt5Widgets.so.5 => /usr/lib/libQt5Widgets.so.5 (0x00007dce28800000)
libQt5Gui.so.5 => /usr/lib/libQt5Gui.so.5 (0x00007dce28000000)
libQt5Core.so.5 => /usr/lib/libQt5Core.so.5 (0x00007dce27a00000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007dce27600000)
libm.so.6 => /usr/lib/libm.so.6 (0x00007dce28f14000)
libgcc_s.so.1 => /usr/lib/libgcc_s.so.1 (0x00007dce37669000)
libc.so.6 => /usr/lib/libc.so.6 (0x00007dce2741e000)
libboost_atomic.so.1.85.0 => /usr/local/lib/libboost_atomic.so.1.85.0 (0x00007dce3765f000)
libGL.so.1 => /usr/lib/libGL.so.1 (0x00007dce2877a000)
libpng16.so.16 => /usr/lib/libpng16.so.16 (0x00007dce37623000)
libz.so.1 => /usr/lib/libz.so.1 (0x00007dce295e6000)
libharfbuzz.so.0 => /usr/lib/libharfbuzz.so.0 (0x00007dce278f2000)
libmd4c.so.0 => /usr/lib/libmd4c.so.0 (0x00007dce28efe000)
libsystemd.so.0 => /usr/lib/libsystemd.so.0 (0x00007dce2868d000)
libdouble-conversion.so.3 => /usr/lib/libdouble-conversion.so.3 (0x00007dce28ee8000)
libicui18n.so.74 => /usr/lib/libicui18n.so.74 (0x00007dce27000000)
libicuuc.so.74 => /usr/lib/libicuuc.so.74 (0x00007dce26c00000)
libpcre2-16.so.0 => /usr/lib/libpcre2-16.so.0 (0x00007dce27f72000)
libzstd.so.1 => /usr/lib/libzstd.so.1 (0x00007dce2734b000)
libglib-2.0.so.0 => /usr/lib/libglib-2.0.so.0 (0x00007dce26eb4000)
/lib64/ld-linux-x86-64.so.2 => /usr/lib64/ld-linux-x86-64.so.2 (0x00007dce377a8000)
libGLdispatch.so.0 => /usr/lib/libGLdispatch.so.0 (0x00007dce26b48000)
libGLX.so.0 => /usr/lib/libGLX.so.0 (0x00007dce28eb6000)
libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0x00007dce26a7a000)
libgraphite2.so.3 => /usr/lib/libgraphite2.so.3 (0x00007dce27f4f000)
libcap.so.2 => /usr/lib/libcap.so.2 (0x00007dce295da000)
libgcrypt.so.20 => /usr/lib/libgcrypt.so.20 (0x00007dce26931000)
liblz4.so.1 => /usr/lib/liblz4.so.1 (0x00007dce278cd000)
liblzma.so.5 => /usr/lib/liblzma.so.5 (0x00007dce2789a000)
libicudata.so.74 => /usr/lib/libicudata.so.74 (0x00007dce24a00000)
libpcre2-8.so.0 => /usr/lib/libpcre2-8.so.0 (0x00007dce26e19000)
libX11.so.6 => /usr/lib/libX11.so.6 (0x00007dce267ee000)
libbz2.so.1.0 => /usr/lib/libbz2.so.1.0 (0x00007dce28ea3000)
libbrotlidec.so.1 => /usr/lib/libbrotlidec.so.1 (0x00007dce2867e000)
libgpg-error.so.0 => /usr/lib/libgpg-error.so.0 (0x00007dce267c8000)
libxcb.so.1 => /usr/lib/libxcb.so.1 (0x00007dce2679d000)
libbrotlicommon.so.1 => /usr/lib/libbrotlicommon.so.1 (0x00007dce2677a000)
libXau.so.6 => /usr/lib/libXau.so.6 (0x00007dce295d5000)
libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0x00007dce28e9b000)
Output of ldd /usr/bin/nextpnr-ecp5:
linux-vdso.so.1 (0x00007ffd71d72000)
libboost_filesystem.so.1.85.0 => /usr/local/lib/libboost_filesystem.so.1.85.0 (0x00007bf2d18f4000)
libboost_program_options.so.1.85.0 => /usr/local/lib/libboost_program_options.so.1.85.0 (0x00007bf2d1889000)
libboost_thread.so.1.85.0 => /usr/local/lib/libboost_thread.so.1.85.0 (0x00007bf2d186b000)
libpython3.11.so.1.0 => /usr/lib/libpython3.11.so.1.0 (0x00007bf2ca800000)
libQt5Widgets.so.5 => /usr/lib/libQt5Widgets.so.5 (0x00007bf2ca000000)
libQt5Gui.so.5 => /usr/lib/libQt5Gui.so.5 (0x00007bf2c9800000)
libQt5Core.so.5 => /usr/lib/libQt5Core.so.5 (0x00007bf2c9200000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007bf2c8e00000)
libm.so.6 => /usr/lib/libm.so.6 (0x00007bf2ca714000)
libgcc_s.so.1 => /usr/lib/libgcc_s.so.1 (0x00007bf2d1844000)
libc.so.6 => /usr/lib/libc.so.6 (0x00007bf2c8c1e000)
libboost_atomic.so.1.85.0 => /usr/local/lib/libboost_atomic.so.1.85.0 (0x00007bf2d183a000)
libGL.so.1 => /usr/lib/libGL.so.1 (0x00007bf2c9f7a000)
libpng16.so.16 => /usr/lib/libpng16.so.16 (0x00007bf2d17fe000)
libz.so.1 => /usr/lib/libz.so.1 (0x00007bf2d17e4000)
libharfbuzz.so.0 => /usr/lib/libharfbuzz.so.0 (0x00007bf2c90f2000)
libmd4c.so.0 => /usr/lib/libmd4c.so.0 (0x00007bf2d17ce000)
libsystemd.so.0 => /usr/lib/libsystemd.so.0 (0x00007bf2c9e8d000)
libdouble-conversion.so.3 => /usr/lib/libdouble-conversion.so.3 (0x00007bf2cadea000)
libicui18n.so.74 => /usr/lib/libicui18n.so.74 (0x00007bf2c8800000)
libicuuc.so.74 => /usr/lib/libicuuc.so.74 (0x00007bf2c8400000)
libpcre2-16.so.0 => /usr/lib/libpcre2-16.so.0 (0x00007bf2c9772000)
libzstd.so.1 => /usr/lib/libzstd.so.1 (0x00007bf2c8b4b000)
libglib-2.0.so.0 => /usr/lib/libglib-2.0.so.0 (0x00007bf2c86b4000)
/lib64/ld-linux-x86-64.so.2 => /usr/lib64/ld-linux-x86-64.so.2 (0x00007bf2d1983000)
libGLdispatch.so.0 => /usr/lib/libGLdispatch.so.0 (0x00007bf2c8348000)
libGLX.so.0 => /usr/lib/libGLX.so.0 (0x00007bf2ca6e2000)
libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0x00007bf2c827a000)
libgraphite2.so.3 => /usr/lib/libgraphite2.so.3 (0x00007bf2ca6bf000)
libcap.so.2 => /usr/lib/libcap.so.2 (0x00007bf2cadde000)
libgcrypt.so.20 => /usr/lib/libgcrypt.so.20 (0x00007bf2c8131000)
liblz4.so.1 => /usr/lib/liblz4.so.1 (0x00007bf2c974d000)
liblzma.so.5 => /usr/lib/liblzma.so.5 (0x00007bf2c90bf000)
libicudata.so.74 => /usr/lib/libicudata.so.74 (0x00007bf2c6200000)
libpcre2-8.so.0 => /usr/lib/libpcre2-8.so.0 (0x00007bf2c8619000)
libX11.so.6 => /usr/lib/libX11.so.6 (0x00007bf2c7fee000)
libbz2.so.1.0 => /usr/lib/libbz2.so.1.0 (0x00007bf2ca6ac000)
libbrotlidec.so.1 => /usr/lib/libbrotlidec.so.1 (0x00007bf2ca69d000)
libgpg-error.so.0 => /usr/lib/libgpg-error.so.0 (0x00007bf2c9099000)
libxcb.so.1 => /usr/lib/libxcb.so.1 (0x00007bf2c7fc3000)
libbrotlicommon.so.1 => /usr/lib/libbrotlicommon.so.1 (0x00007bf2c7fa0000)
libXau.so.6 => /usr/lib/libXau.so.6 (0x00007bf2d17bf000)
libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0x00007bf2cadd6000)
Output of ls /usr/local/include/boost/:
accumulators compute filesystem.hpp iterator mysql.hpp python system
algorithm compute.hpp flyweight iterator_adaptors.hpp next_prior.hpp python.hpp system.hpp
align concept flyweight.hpp iterator.hpp noncopyable.hpp qvm test
aligned_storage.hpp concept_archetype.hpp foreach_fwd.hpp json nondet_random.hpp qvm.hpp thread
align.hpp concept_check foreach.hpp json.hpp none.hpp qvm_lite.hpp thread.hpp
any concept_check.hpp format lambda none_t.hpp random throw_exception.hpp
any.hpp config format.hpp lambda2 non_type.hpp random.hpp timer
archive config.hpp function lambda2.hpp nowide range timer.hpp
array.hpp container functional leaf numeric range.hpp token_functions.hpp
asio container_hash functional.hpp leaf.hpp operators.hpp ratio token_iterator.hpp
asio.hpp context function_equal.hpp lexical_cast operators_v1.hpp ratio.hpp tokenizer.hpp
assert contract function.hpp lexical_cast.hpp optional rational.hpp tti
assert.hpp contract.hpp function_output_iterator.hpp limits.hpp optional.hpp redis tuple
assign contract_macro.hpp function_types locale outcome redis.hpp type_erasure
assign.hpp convert fusion locale.hpp outcome.hpp ref.hpp type.hpp
atomic convert.hpp generator_iterator.hpp local_function parameter regex type_index
atomic.hpp core geometry local_function.hpp parameter.hpp regex_fwd.hpp type_index.hpp
beast coroutine geometry.hpp lockfree pending regex.h typeof
beast.hpp coroutine2 get_pointer.hpp log pfr regex.hpp type_traits
bimap crc.hpp gil logic pfr.hpp safe_numerics type_traits.hpp
bimap.hpp cregex.hpp gil.hpp make_default.hpp phoenix scope units
bind cstdfloat.hpp graph make_shared.hpp phoenix.hpp scoped_array.hpp unordered
bind.hpp cstdint.hpp hana make_unique.hpp pointee.hpp scoped_ptr.hpp unordered_map.hpp
blank_fwd.hpp cstdlib.hpp hana.hpp math pointer_cast.hpp scope_exit.hpp unordered_set.hpp
blank.hpp current_function.hpp heap math_fwd.hpp pointer_to_other.hpp serialization url
callable_traits cxx11_char_types.hpp histogram mem_fn.hpp poly_collection shared_array.hpp url.hpp
callable_traits.hpp date_time histogram.hpp memory_order.hpp polygon shared_container_iterator.hpp utility
call_traits.hpp date_time.hpp hof metaparse polymorphic_cast.hpp shared_ptr.hpp utility.hpp
cast.hpp describe hof.hpp metaparse.hpp polymorphic_pointer_cast.hpp signals2 uuid
cerrno.hpp describe.hpp icl move pool signals2.hpp variant
charconv detail implicit_cast.hpp mp11 predef smart_ptr variant2
charconv.hpp dll indirect_reference.hpp mp11.hpp predef.h smart_ptr.hpp variant2.hpp
checked_delete.hpp dll.hpp integer mpi preprocessor sort variant.hpp
chrono dynamic_bitset integer_fwd.hpp mpi.hpp preprocessor.hpp spirit version.hpp
chrono.hpp dynamic_bitset_fwd.hpp integer.hpp mpl process spirit.hpp visit_each.hpp
circular_buffer dynamic_bitset.hpp integer_traits.hpp msm process.hpp stacktrace vmd
circular_buffer_fwd.hpp enable_shared_from_this.hpp interprocess multi_array program_options stacktrace.hpp wave
circular_buffer.hpp endian intrusive multi_array.hpp program_options.hpp statechart wave.hpp
cobalt endian.hpp intrusive_ptr.hpp multi_index progress.hpp static_assert.hpp weak_ptr.hpp
cobalt.hpp exception io multi_index_container_fwd.hpp property_map static_string winapi
compat exception_ptr.hpp io_fwd.hpp multi_index_container.hpp property_tree static_string.hpp xpressive
compatibility fiber iostreams multiprecision proto stl_interfaces yap
compressed_pair.hpp filesystem is_placeholder.hpp mysql ptr_container swap.hpp
gareth-anthony-hulse commented
It just came to mind that I might have an old version of NextPNR installed. Tried which nextpnr-ecp5 and sure enough the output was /usr/local/bin/nextpnr-ecp5. I completely forgot that I had built and installed a source version of NextPNR many months ago, up until now. Removed NextPNR for ECP5 and iCE40 from /usr/local/bin/. Now everything now works.