ZRChao's Stars
hakyimlab/gtex-gwas-analysis
rivas-lab/covid19
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
MG-RAST/MG-RAST
The MG-RAST Backend -- the API server
cduvallet/microbiomeHD
Cross-disease comparison of case-control gut microbiome studies
gephi/gephi
Gephi - The Open Graph Viz Platform
FrederickHuangLin/ANCOM-Code-Archive
Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.
shap/shap
A game theoretic approach to explain the output of any machine learning model.
ropensci-archive/umapr
:no_entry: ARCHIVED :no_entry: Wraps UMAP Algorithm for Dimension Reduction
briatte/ggnet
Network visualization with ggplot2
nasqar/NASQAR
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
scipy/scipy
SciPy library main repository
LangilleLab/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
topepo/caret
caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
YuLab-SMU/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
bbolker/broom.mixed
tidy methods for mixed models in R
lme4/lme4
Mixed-effects models in R using S4 classes and methods with RcppEigen
PennChopMicrobiomeProgram/ZIBR
Zero-Inflated Beta Random Effect model
runehaubo/lmerTestR
Repository for the R-package lmerTest
bbolker/mixedmodels-misc
miscellaneous materials for mixed models, mostly in R
joey711/shiny-phyloseq
An interactive web application for demonstrating and using phyloseq.
microbiome/microbiome
microbiome R package
halfrost/Halfrost-Field
✍🏻 这里是写博客的地方 —— Halfrost-Field 冰霜之地
zdk123/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
jiajunhua/benedekrozemberczki-awesome-graph-classification
biocore/qurro
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
fengdu78/Data-Science-Notes
数据科学的笔记以及资料搜集
rougier/numpy-100
100 numpy exercises (with solutions)
huaxz1986/cplusplus-_Implementation_Of_Introduction_to_Algorithms
《算法导论》第三版中算法的C++实现
afshinea/stanford-cs-229-machine-learning
VIP cheatsheets for Stanford's CS 229 Machine Learning
biocore/emp
Code repository of the Earth Microbiome Project.