ZainulArifin1's Stars
PhilippJunk/protanar
PROTeomics ANAlysis in R
wanglabtongji/CCI
Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
tanaylab/metacells
Metacells - Single-cell RNA Sequencing Analysis
AGen23/Longhack2023-iNET
VergaJU/Longhack2023
McGranahanLab/TcellExTRECT
evotools/nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
jokergoo/simplifyEnrichment
Simplify functional enrichment results
tpq/propr
[OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
Systems-Biology-Ireland/SingleCell-Analysis
spotify/annoy
Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk
reactome/ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
ncborcherding/escape
Easy single cell analysis platform for enrichment
broadinstitute/ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
neurorestore/Libra
nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
zhxiaokang/RASflow
RNA-Seq analysis workflow
sridnona/cb_sniffer
mutation(barcode) caller for 10x single cell data
Zac-Ma/process-single_cell
Intership
pixeltris/TwitchAdSolutions
IanevskiAleksandr/sc-type
kstreet13/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
statOmics/tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
BKI-immuno/neoantigen-specific-T-cells-NSCLC
lgatto/MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
arnesmits/DEP
DEP package
stekhoven/missForest
missForest is a nonparametric, mixed-type imputation method for basically any type of data for the statistical software R.
KlugerLab/DAseq
satijalab/seurat
R toolkit for single cell genomics
scverse/scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data