Pinned Repositories
cdc_mmwr_liberation
A project to liberate the Center for Disease Control MMWR data. Worked on at the 2013 Ann Arbor Hack for Change event.
grd_to_cmap
Extract data from Adobe Photoshop .grd gradient files and convert to to Python/Matplotlib colormap specification.
osf_oauth2_demo
Simple demonstration of the OAuth2 client flow for connecting to the OSF
slides
Presentations and slide decks
lesson-example
Example lesson using The Carpentries lesson template.
osf.io
Facilitating Open Science
locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
locuszoom-hosted
A web service to upload and share GWAS results with LocusZoom.js
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
abought's Repositories
abought/slides
Presentations and slide decks
abought/weetabix
Simple indexing of plaintext columnar data (package coming soon)
abought/zorp
A simple GWAS parser + CLI
abought/locuszoom-hosted
Upload and share GWAS results with LocusZoom.js
abought/abought
Public README
abought/abought.github.io
Personal content
abought/cicd-demo
abought/cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
abought/dalliance
Interactive web-based genome browser.
abought/filefetcher
Manage large asset files required for a python package
abought/flask
The Python micro framework for building web applications.
abought/genelocator
abought/gfg-interactive
Interactive survey module (ISM) for Genes for Good
abought/imputationserver
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
abought/LDServer
LD Server For Web
abought/localzoom
Make interactive LocusZoom plots from a GWAS file
abought/locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
abought/locuszoom-api
Flask server code for LocusZoom APIs
abought/nf-executor
abought/particle-clicker
An addictive incremental game that teaches players the history of high energy particle physics
abought/pheweb
A tool to build multi-phenotype GWAS browsers
abought/portal-aggregation-tests
Proposal for implementing aggregation tests on the T2D portal
abought/raremetal.js
JS implementation of rare variant aggregation tests
abought/styles
Styles for SWC/DC sites. Documentation at http://swcarpentry.github.io/lesson-example/.
abought/tabix-client-js
A proof of concept for reading a tabix indexed file in a web browser
abought/tabix-reader
Read Tabix files in JS. Extracted from Biodalliance.
abought/tabulator
Interactive Tables and Data Grids for JavaScript
abought/terraform-aws-imputation-server
A set of Terraform Modules for deploying an imputation server on AWS
abought/undercomplicate
Orderly retrieval of messy data (now part of LocusZoom.js)
abought/weetabix-client
Incrementally access plaintext columnar datafiles over the web