Prevent ensembldb from attaching and masking dplyr
Closed this issue · 1 comments
mjsteinbaugh commented
When using ensembldb to access AnnotationHub, the package attaches and masks dplyr::filter()
. Here's a minimal example:
library(basejump)
filter
# namespace:stats
library(tidyverse)
filter
# namespace:dplyr
anno <- annotable("Homo sapiens")
filter
# namespace:ensembldb
We need to add a detection step to check if ensembldb is attaching, and make sure it is unattached after an annotable()
call.
mjsteinbaugh commented
Fix is documented in latest commit on develop branch.