/brain-data

Curated public data for human and mouse brain

Apache License 2.0Apache-2.0

Curated public data for human and mouse brain

Normal

Mouse

Cortex

Spatial
  1. SeqFish+ https://github.com/CaiGroup/seqFISH-PLUS
  2. MerFish https://datadryad.org/stash/dataset/doi:10.5061/dryad.x3ffbg7mw (Mouse and Human)
Single-cell (single-nucleus)
  1. Azimuth https://azimuth.hubmapconsortium.org/ (Mouse and Human)
Aging
  1. Single-cell transcriptomic profiling of the aging mouse brain Nature Neuroscience
  2. A distinct astrocyte subtype in the aging mouse brain characterized by impaired protein homeostasis Nature Aging

Human

Cortex

Spatial
  1. MerFish https://datadryad.org/stash/dataset/doi:10.5061/dryad.x3ffbg7mw (Mouse and Human)
Single-cell (single-nucleus)
  1. SMART-seq https://portal.brain-map.org/atlases-and-data/rnaseq/human-mtg-smart-seq
  2. Azimuth https://azimuth.hubmapconsortium.org/ (Mouse and Human)

Hippocampus

  1. Molecular landscapes of human hippocampal immature neurons across lifespan Nature (single-nucleus)

Alzheimer’s disease

  1. Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer’s disease Nature Genetics