Configuring incomplete,errors occurred
zhuimsda-daad opened this issue · 9 comments
When I install clfft, the configuration is incomplete and an error occurs. I don't know how to find and solve this problem
I cannot help you based on a very limited information that you provided. I guess, you're following the instructions at https://github.com/adda-team/adda/wiki/InstallingclFFT, aren't you? Where specifically the error occurs? What output do you get?
I have found your issue at clFFT - clMathLibraries/clFFT#242 . But it neither provides sufficient information.
Which OS you use? Have you tried installing clFFT through the package manager?
yes,thank you for your reply.I am following the instructions at https://github.com/adda-team/adda/wiki/InstallingclFFT and use centos 7.The output I get is as follows:
The system is: Linux - 3.10.0-1160.76.1.el7.x86_64 - x86_64
Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded.
Compiler: /usr/bin/cc
Build flags:
Id flags:
The output was:
0
Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out"
The C compiler identification is GNU, found in "/home/lxf/ADDA/clFFT-2.12.2/src/CMakeFiles/3.13.2/CompilerIdC/a.out"
Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
Compiler: /usr/bin/c++
Build flags:
Id flags:
The output was:
0
Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out"
The CXX compiler identification is GNU, found in "/home/lxf/ADDA/clFFT-2.12.2/src/CMakeFiles/3.13.2/CompilerIdCXX/a.out"
Determining if the C compiler works passed with the following output:
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First, I cannot understand the output of which command you parsed. Is it: cmake -DCMAKE_INSTALL_PREFIX=$HOME .? If yes, here are a few thoughts:
- your output is really long. For instance, I have just run this command it on our Linux cluster (SUSE Linux Enterprise Server 4.12.14-122.121-default) and the output is
mayurkin@clu:~/clFFT-2.12.2/src$ cmake -DCMAKE_INSTALL_PREFIX=$HOME .
-- UNICODE feature disabled on linux
-- 64bit build - FIND_LIBRARY_USE_LIB64_PATHS TRUE
CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:725 (message):
Imported targets not available for Boost version
Call Stack (most recent call first):
/usr/share/cmake/Modules/FindBoost.cmake:763 (_Boost_COMPONENT_DEPENDENCIES)
/usr/share/cmake/Modules/FindBoost.cmake:1315 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:147 (find_package)
-- Could NOT find Boost
CMake Warning at CMakeLists.txt:151 (message):
Try setting Boost_DEBUG and Boost_DETAILED_FAILURE_MSG for more information
-- Detected GNU fortran compiler.
-- CMAKE_CXX_COMPILER flags: -m64 -pthread
-- CMAKE_CXX_COMPILER debug flags: -g
-- CMAKE_CXX_COMPILER release flags: -O3 -DNDEBUG
-- CMAKE_CXX_COMPILER relwithdebinfo flags: -O2 -g -DNDEBUG
-- CMAKE_EXE_LINKER link flags:
FFT clients will NOT be built
GoogleTest unit tests will NOT be built
FFT callback client will NOT be built
-- Configuring done
-- Generating done
-- Build files have been written to: /mnt/storage/home/mayurkin/clFFT-2.12.2/src
-
At the same time, I cannot find any immediate errors in your output. So impossible to suggest anything specific.
-
Looking at the required dependencies of clFFT (https://github.com/clMathLibraries/clFFT/wiki/Build) - only OpenCL is strictly required. So you must ensure that you have a GPU with proper drivers installed. See https://github.com/adda-team/adda/wiki/OpenCL . Moreover, I recommend to try to compile
adda_oclwithout clFFT, by usingmake ocl OPTIONS=CLFFT_APPLE, at least to check that your OpenCL framework is working fine. If yes, you may even use this ADDA version for simulation, but it will be significantly slower than with clFFT. -
I still recommend that you try to find a clFFT package for your OS. I have no experience with CentOS, but some package manager should be available, so search for clfft in the corresponding package repositories.
thank,myurkin.I have solved the above problems
That's great. But can you please specify, how you solved it (it may be useful for other ADDA users).
I changed a 2080ti machine and installed the corresponding graphics card driver. Then I entered the installation command and it was successful. But I have another problem. The speed of running ADDA instructions on GPU is much slower than that on CPU. The time gap is mainly in the calculating grid of scattered field. The corresponding instructions are as follows:
CPU:time mpiexec -n 20 ./adda-master/src/mpi/adda_mpi -shape sphere -size 2 -dpl 15 -m 1.2 0.0010 -lambda 0.3988 -scat_grid_inp ./scat_params.dat -store_scat_grid
Totall time:2m9s
GPU:time ./adda-master/src/ocl/adda_ocl -shape sphere -size 2 -dpl 15 -m 1.2 0.0010 -lambda 0.3988 -scat_grid_inp ./scat_params.dat -store_scat_grid -gpu 3
Totall time:14m25s
Why is GPU slow?
Yes, you hit an issue #226 . So the scattered fields are actually computed not on GPU, but rather on a single core, which is much slower than in MPI mode. And this happens to be a bottleneck in your application.
As far as I know, no one is planning to solve this issue in the near future, although ADDA is always open to contributions. The only workaround I can think of at the moment is to compute the internal fields by the GPU (adda_ocl), save them to file (-store_int_field), then divide them into several files (for each core) and upload into adda_mpi (-init_field read). The file division is the most tricky, since you need to make some script for that. As a result, you should get the same files, as produced by adda_mpi -store_int_field .... And this workaround is only meaningful if the time for saving, processing, and loading these files is reasonably small. That is probably so, but need to be tested.
ok，thank you very much for your help.I am tring to do it
Do you have any more questions concerning this issue? If not, I will close it.