How to replicate the paper's analysis?

[athowes]

Hi Adrian,

I'd like to do some work on models similar to those implemented in epinowcast. I think building on your work here would be the best place to start as what you have here is a bit more stripped back / research-y than in the epinowcast repo itself.

To get started with this, I thought it'd be good for me to try to replicate the analysis in your paper. Do you know how I'd go about doing this?

In code/ I can see models/ containing the .stan files and utils/. Is there a script somewhere for using the functions in utils/ to run the analysis?

Best wishes,
Adam

[adrian-lison]

Hey Adam,

of course! This here is the work-in-progress repo that also contains stuff not in the paper. The analyses from the paper are in a separate repo at https://github.com/adrian-lison/generative-nowcasting-study. The README in there should explain the structure, but if you have questions, just let me know. You might need a HPC though if you want to run all the analyses because there are lots of simulation runs.

I think I will add a link to the study repo in the README.

Best
Adrian