adrian-lison

adrian-lison's Stars

• pditommaso/awesome-pipeline

  A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

  6.2k23127625

• ropensci/targets

  Function-oriented Make-like declarative workflows for R

  Language:R9451752674

• GenSpectrum/cov-spectrum-website

  A web platform to detect and analyze variants of SARS-CoV-2

  Language:TypeScript61552914

• epinowcast/epinowcast

  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

  Language:R58625921

• CDCgov/ww-inference-model

  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

  Language:R18111252

• adrian-lison/EpiSewer

  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.

  Language:R15970

• JarnoRFB/epysurv

  Epidemiological surveillance in Python

  Language:Python103154

• adrian-lison/methodologies-npi-effects

  The methodologies to assess the effects of non-pharmaceutical interventions during COVID-19: a systematic review

  6200

• NCBI-Codeathons/beyond-phylogenies-team6

  Language:Python56110

• epinowcast/coerceDT

  Ingest-and-check user-provided input to standardized `data.table`s

  Language:R3380

• im-ethz/wave

  Language:R2100

• stephaneghozzi/survstat-multidim

  R functions and examples for querying the Robert Koch Institute's (RKI) SurvStat dataset

  Language:R1120