could not find function "get_cellAnnotation"
yingyonghui opened this issue · 7 comments
After install the package, I ran the command line "cellInfo <- get_cellAnnotation(loom)".
But it showed that "could not find function 'get_cellAnnotation'".
Could anyone help me?
Thanks!
Hi @yingyonghui ,
Did you load the R package ?
library(SCopeLoomR)
Could you also try to run ?SCopeLoomR::get_cellAnnotation
Hi @yingyonghui ,
Did you load the R package ?library(SCopeLoomR)Could you also try to run
?SCopeLoomR::get_cellAnnotation
Thanks for your reply @Mase5 ,
I followed the instruction in [https://rawcdn.githack.com/aertslab/SCENIC/0a4c96ed8d930edd8868f07428090f9dae264705/inst/doc/SCENIC_Running.html]
After loading the package and running the command line "get_cellAnnotation(loom)", it ended up with the errors above.
I tried ?SCopeLoomR::get_cellAnnotation, but it showed that "No documentation for ‘get_cellAnnotation’ ...", just as the following:
library(SCopeLoomR)
Attaching package: ‘SCopeLoomR’
The following object is masked from ‘package:base’:
flush
?SCopeLoomR::get_cellAnnotation
No documentation for ‘get_cellAnnotation’ in specified packages and libraries:
you could try ‘??get_cellAnnotation’
Could you tell which version of SCopeLoomR you have installed ?
You can know this by running packageVersion("SCopeLoomR")
Could you tell which version of SCopeLoomR you have installed ?
You can know this by runningpackageVersion("SCopeLoomR")
It shows that the version of SCopeLoomR is 0.3.1.
And the version of R is 3.5.1, in an Ubuntu 18.04 platform.
Thanks.
Could you tell which version of SCopeLoomR you have installed ?
You can know this by runningpackageVersion("SCopeLoomR")It shows that the version of SCopeLoomR is 0.3.1.
And the version of R is 3.5.1, in an Ubuntu 18.04 platform.
Thanks.
I reinstalled SCopeLoomR of version 0.5.0, and it works correctly now.
Thanks for your reminder!
I think this issue could be closed now.
Just in case someone wonders:
I am using SCopeLoomR v.0.13.0, but got the same issue: could not find function "get_cellAnnotation".
Then I found that the function now goes by: get_cell_annotation().
Just in case someone wonders: I am using SCopeLoomR v.0.13.0, but got the same issue: could not find function "get_cellAnnotation". Then I found that the function now goes by: get_cell_annotation().
I am using ScopeLoomR v.0.13.0, the same problem you have, can you use it now? How to solve this problem