Pinned Repositories
aas-extended-examples
A collection of notebooks used in the tutorials for the applied analytic statistics course in 2020
epi-sim
A library for simulating epidemics, with a focus on phylodynamics and observation models.
github-tutorial
A tutorial on the use of git, and GitHub for open and reproducible science. See the live version of this here: https://aezarebski.github.io/misc/github-tutorial/README.html
nicemacs
configuration for spacemacs
timtam
Code to carry out the computational experiments described in the manuscript "A computationally tractable birth-death model that combines phylogenetic and epidemiological data"
timtam-calibration-study
timtam-tajikistan
timtam2
This repository is an implementation of the TimTam likelihood as a BEAST2 package.
timtamslamR
functions to make it easier to work with the timtam BEAST2 package
vegacookbook
A port of the BBC ggplot2 cookbook into vega and vegalite
aezarebski's Repositories
aezarebski/aas-extended-examples
A collection of notebooks used in the tutorials for the applied analytic statistics course in 2020
aezarebski/github-tutorial
A tutorial on the use of git, and GitHub for open and reproducible science. See the live version of this here: https://aezarebski.github.io/misc/github-tutorial/README.html
aezarebski/timtam2
This repository is an implementation of the TimTam likelihood as a BEAST2 package.
aezarebski/nicemacs
configuration for spacemacs
aezarebski/timtam
Code to carry out the computational experiments described in the manuscript "A computationally tractable birth-death model that combines phylogenetic and epidemiological data"
aezarebski/epi-sim
A library for simulating epidemics, with a focus on phylodynamics and observation models.
aezarebski/spacemacs
A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!
aezarebski/beasts-castle
This repository contains some helpful scripts for working with BEAST2.
aezarebski/timtam-calibration-study
aezarebski/timtam-tajikistan
aezarebski/timtamslamR
functions to make it easier to work with the timtam BEAST2 package
aezarebski/aezarebski.github.io
aezarebski/backgammon-clock
A Fischer style clock for backgammon
aezarebski/beast2-site
beast2 web development site
aezarebski/bibread
aezarebski/biology-github-tutorial
Question https://github.com/aezarebski/github-tutorial/tree/q4-tweak#question-4
aezarebski/CBAN
releases of beast2 packaged zip files in a reliable location
aezarebski/conflict-resolution-example
Question 4 of https://github.com/aezarebski/github-tutorial
aezarebski/copilot.el
An unofficial Copilot plugin for Emacs.
aezarebski/covasim
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
aezarebski/covid19db-figshare
aezarebski/derp-simulation
aezarebski/either
the EitherT monad transformer
aezarebski/git-usage
aezarebski/maxima-layer
Spacemacs layer that configures maxima.el
aezarebski/milligram
A minimalist CSS framework.
aezarebski/phylodynamic-covasim
An example of how to use covasim for simulations which can be analysed with phylodynamic methods
aezarebski/remaster
High-fidelity stochastic tree simulation for BEAST 2.
aezarebski/whipper-snipper
My yasnippet files
aezarebski/white-chocolate-macadamia
a haskell stack template for a cookie cutter project