IndexError: list index out of range
ZhaoyanZhong opened this issue · 1 comments
ZhaoyanZhong commented
Hello,
Thanks for the wonderful tool!
when I run the command 'liftoff -g Cv0.1.gff -m minimap2 -p 10 C.final.rawchrom.fasta Cndv0.1.fa', I faced this error:
2021-12-19 11:47:29,603 - INFO - Running ANALYZE features
extracting features
Traceback (most recent call last):
File "/home/zhaoyanzhong/App/miniconda3/envs/liftoff/lib/python3.9/site-packages/pyfaidx/init.py", line 559, in build_index
rname = line.rstrip('\n\r')[1:].split()[
IndexError: list index out of range
I would like to ask how to solve this problem?
Thanks so much!
agshumate commented
hi,
this looks like the error is coming from the pyfaidx library during the fasta indexing step. I would make sure that both of your fasta files are correctly formatted