agshumate/Liftoff

installation problem

Closed this issue · 4 comments

WengangxJJ commented

Hi,
I am trying to install Liftoff, while with the error report when I use 'pip install Liftoff' as follow. Could you kindly point me how to copy with the problem?
Many thanks,
Wengang
.....................
ERROR: multiqc 1.8.dev0 has requirement matplotlib<3.1.0,>=2.1.1, but you'll have matplotlib 3.1.2 which is incompatible.
Installing collected packages: numpy, biopython, pyfaidx, argh, argcomplete, gffutils, networkx, pysam, interlap, Liftoff
Running setup.py install for numpy ... error
ERROR: Command errored out with exit status 1:
command: /exports/applications/apps/SL7/anaconda/5.0.1/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-t6vivbcn/numpy/setup.py'"'"'; file='"'"'/tmp/pip-install-t6vivbcn/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-dvqzpuz1/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/s1874451/.local/include/python3.6m/numpy --prefix=/home/s1874451/schoenebeck_group/WENGANG/python_lib
cwd: /tmp/pip-install-t6vivbcn/numpy/
Complete output (34 lines):
Running from numpy source directory.

Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:

  - `pip install .`       (from a git repo or downloaded source
                           release)
  - `pip install numpy`   (last NumPy release on PyPi)

..................

agshumate commented

Hi Wengang,
Which version of python are you running?

WengangxJJ commented

Hi Wengang,
Which version of python are you running?

Hi Agshumate,
I used 3.6.3 from anaconda/5.0.1
Thanks.

[s1874451@tc04(eddie) WENGANG]$ python -V
Python 3.6.3 :: Anaconda, Inc.

agshumate commented

Okay this should not be the problem then. it looks like it is failing when trying to install numpy. Are you able to successfully run "pip install numpy"? if not, it is maybe something to do with your environment rather than a specific problem with Liftoff.

WengangxJJ commented

Hi， I figure it out by creating a new conda environment. Many thanks!

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